miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 49104 0.71 0.1799
Target:  5'- uCCCGUugUCggCGCuCAUCCCUugccGCCCUu -3'
miRNA:   3'- -GGGCAugAGgaGCG-GUGGGGA----CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 43034 1.13 0.000139
Target:  5'- uCCCGUACUCCUCGCCACCCCUGCCCCa -3'
miRNA:   3'- -GGGCAUGAGGAGCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 41095 0.7 0.237851
Target:  5'- uUCCGgcugGCUCCg-GCCACCCUUucuuccagccGCUCCa -3'
miRNA:   3'- -GGGCa---UGAGGagCGGUGGGGA----------CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 48905 0.71 0.194336
Target:  5'- cCCUGcACUUCgacgGCCACCCC-GCCCUg -3'
miRNA:   3'- -GGGCaUGAGGag--CGGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 28312 0.73 0.13482
Target:  5'- uCCaCGUACcaguccaccuUCCg-GCCGCCCUUGUCCCa -3'
miRNA:   3'- -GG-GCAUG----------AGGagCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 14143 0.68 0.309897
Target:  5'- gUCGUAUUCCUCaccgacaGCCGCCgcgaCCUGCUgCCg -3'
miRNA:   3'- gGGCAUGAGGAG-------CGGUGG----GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 37853 0.7 0.22626
Target:  5'- gCCCcUGCacagCCccuucgCGCCG-CCCUGCCCCg -3'
miRNA:   3'- -GGGcAUGa---GGa-----GCGGUgGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 6992 0.66 0.416901
Target:  5'- gCCGcuucggACUCCUCacuGCCAUCaCCggcGCCCUc -3'
miRNA:   3'- gGGCa-----UGAGGAG---CGGUGG-GGa--CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 47316 0.75 0.101989
Target:  5'- -aCGUugUCCaccaucuccagcgCGCCGCCCUUGCCCa -3'
miRNA:   3'- ggGCAugAGGa------------GCGGUGGGGACGGGg -5'
11419 5' -61.5 NC_003085.1 + 42345 0.68 0.303365
Target:  5'- uCCUGgACuUCCuUCGCCGCCCgcucgcgcaUGCCCUc -3'
miRNA:   3'- -GGGCaUG-AGG-AGCGGUGGGg--------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 12983 0.68 0.295525
Target:  5'- cUCCGUGC-CCUgGCUACCuccaacaCCUaCCCCg -3'
miRNA:   3'- -GGGCAUGaGGAgCGGUGG-------GGAcGGGG- -5'
11419 5' -61.5 NC_003085.1 + 20231 0.66 0.373469
Target:  5'- uCCgGUACg--UCGCCACCUUcGCCCa -3'
miRNA:   3'- -GGgCAUGaggAGCGGUGGGGaCGGGg -5'
11419 5' -61.5 NC_003085.1 + 668 0.69 0.249934
Target:  5'- gCCCGga--CgUCGCCgGCCaCCUGUCCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGG-UGG-GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 46665 0.66 0.390471
Target:  5'- gCCGagGCgCUUCGCCGCCgCCUggagcGCCgCCg -3'
miRNA:   3'- gGGCa-UGaGGAGCGGUGG-GGA-----CGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 4035 0.66 0.390471
Target:  5'- gCCGUGa-CgaCGCCACCgC-GCCCCa -3'
miRNA:   3'- gGGCAUgaGgaGCGGUGGgGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 26757 0.66 0.402668
Target:  5'- aCCGgcgGCcCUUCGCCACCaaccggaugcuggaCUGCgCCa -3'
miRNA:   3'- gGGCa--UGaGGAGCGGUGGg-------------GACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 40241 0.7 0.22626
Target:  5'- -gCGgGCUCUUCGCCGCCggggccuacguCCcGCCCCc -3'
miRNA:   3'- ggGCaUGAGGAGCGGUGG-----------GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 2311 0.66 0.40797
Target:  5'- gCUGgcCUgCCUCGCCACCg--GCCgCCg -3'
miRNA:   3'- gGGCauGA-GGAGCGGUGGggaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 43960 0.68 0.289229
Target:  5'- -aCGUGCUcCCUCaCgGCCCg-GCCCCa -3'
miRNA:   3'- ggGCAUGA-GGAGcGgUGGGgaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 24144 0.66 0.416901
Target:  5'- gCUgGUACUCCggcuaugacgUGCUACCgaCgGCCCCa -3'
miRNA:   3'- -GGgCAUGAGGa---------GCGGUGGg-GaCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.