Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11419 | 5' | -61.5 | NC_003085.1 | + | 49104 | 0.71 | 0.1799 |
Target: 5'- uCCCGUugUCggCGCuCAUCCCUugccGCCCUu -3' miRNA: 3'- -GGGCAugAGgaGCG-GUGGGGA----CGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 43034 | 1.13 | 0.000139 |
Target: 5'- uCCCGUACUCCUCGCCACCCCUGCCCCa -3' miRNA: 3'- -GGGCAUGAGGAGCGGUGGGGACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 41095 | 0.7 | 0.237851 |
Target: 5'- uUCCGgcugGCUCCg-GCCACCCUUucuuccagccGCUCCa -3' miRNA: 3'- -GGGCa---UGAGGagCGGUGGGGA----------CGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 48905 | 0.71 | 0.194336 |
Target: 5'- cCCUGcACUUCgacgGCCACCCC-GCCCUg -3' miRNA: 3'- -GGGCaUGAGGag--CGGUGGGGaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 28312 | 0.73 | 0.13482 |
Target: 5'- uCCaCGUACcaguccaccuUCCg-GCCGCCCUUGUCCCa -3' miRNA: 3'- -GG-GCAUG----------AGGagCGGUGGGGACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 14143 | 0.68 | 0.309897 |
Target: 5'- gUCGUAUUCCUCaccgacaGCCGCCgcgaCCUGCUgCCg -3' miRNA: 3'- gGGCAUGAGGAG-------CGGUGG----GGACGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 37853 | 0.7 | 0.22626 |
Target: 5'- gCCCcUGCacagCCccuucgCGCCG-CCCUGCCCCg -3' miRNA: 3'- -GGGcAUGa---GGa-----GCGGUgGGGACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 6992 | 0.66 | 0.416901 |
Target: 5'- gCCGcuucggACUCCUCacuGCCAUCaCCggcGCCCUc -3' miRNA: 3'- gGGCa-----UGAGGAG---CGGUGG-GGa--CGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 47316 | 0.75 | 0.101989 |
Target: 5'- -aCGUugUCCaccaucuccagcgCGCCGCCCUUGCCCa -3' miRNA: 3'- ggGCAugAGGa------------GCGGUGGGGACGGGg -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 42345 | 0.68 | 0.303365 |
Target: 5'- uCCUGgACuUCCuUCGCCGCCCgcucgcgcaUGCCCUc -3' miRNA: 3'- -GGGCaUG-AGG-AGCGGUGGGg--------ACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 12983 | 0.68 | 0.295525 |
Target: 5'- cUCCGUGC-CCUgGCUACCuccaacaCCUaCCCCg -3' miRNA: 3'- -GGGCAUGaGGAgCGGUGG-------GGAcGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 20231 | 0.66 | 0.373469 |
Target: 5'- uCCgGUACg--UCGCCACCUUcGCCCa -3' miRNA: 3'- -GGgCAUGaggAGCGGUGGGGaCGGGg -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 668 | 0.69 | 0.249934 |
Target: 5'- gCCCGga--CgUCGCCgGCCaCCUGUCCCg -3' miRNA: 3'- -GGGCaugaGgAGCGG-UGG-GGACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 46665 | 0.66 | 0.390471 |
Target: 5'- gCCGagGCgCUUCGCCGCCgCCUggagcGCCgCCg -3' miRNA: 3'- gGGCa-UGaGGAGCGGUGG-GGA-----CGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 4035 | 0.66 | 0.390471 |
Target: 5'- gCCGUGa-CgaCGCCACCgC-GCCCCa -3' miRNA: 3'- gGGCAUgaGgaGCGGUGGgGaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 26757 | 0.66 | 0.402668 |
Target: 5'- aCCGgcgGCcCUUCGCCACCaaccggaugcuggaCUGCgCCa -3' miRNA: 3'- gGGCa--UGaGGAGCGGUGGg-------------GACGgGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 40241 | 0.7 | 0.22626 |
Target: 5'- -gCGgGCUCUUCGCCGCCggggccuacguCCcGCCCCc -3' miRNA: 3'- ggGCaUGAGGAGCGGUGG-----------GGaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 2311 | 0.66 | 0.40797 |
Target: 5'- gCUGgcCUgCCUCGCCACCg--GCCgCCg -3' miRNA: 3'- gGGCauGA-GGAGCGGUGGggaCGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 43960 | 0.68 | 0.289229 |
Target: 5'- -aCGUGCUcCCUCaCgGCCCg-GCCCCa -3' miRNA: 3'- ggGCAUGA-GGAGcGgUGGGgaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 24144 | 0.66 | 0.416901 |
Target: 5'- gCUgGUACUCCggcuaugacgUGCUACCgaCgGCCCCa -3' miRNA: 3'- -GGgCAUGAGGa---------GCGGUGGg-GaCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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