Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 48802 | 0.69 | 0.419248 |
|
Target: 5'- cGCggGGCUCaCGGCagCACCuCUUUCgcgCCg -3' miRNA: 3'- cCGa-CCGAG-GCCG--GUGG-GAAAGaa-GG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 35118 | 0.69 | 0.409929 |
|
Target: 5'- uGGCaGG-UCCGGCC-CCUcgUCUUCUc -3' miRNA: 3'- -CCGaCCgAGGCCGGuGGGaaAGAAGG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 27352 | 0.69 | 0.409005 |
|
Target: 5'- cGGCgccgGGCUCugcugggCGGCCugCUUcugcgccUCUUCCg -3' miRNA: 3'- -CCGa---CCGAG-------GCCGGugGGAa------AGAAGG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 6374 | 0.7 | 0.382762 |
|
Target: 5'- uGCUGGCggCCGGUCG---UUUCUUCCu -3' miRNA: 3'- cCGACCGa-GGCCGGUgggAAAGAAGG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 45357 | 0.7 | 0.355135 |
|
Target: 5'- uGGCUGGCagccuggaccgcCCGGcCCACCCagaaCUUCUg -3' miRNA: 3'- -CCGACCGa-----------GGCC-GGUGGGaaa-GAAGG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 2630 | 0.71 | 0.301215 |
|
Target: 5'- cGCUGGCUCCcaGCUACCCg--CUugggCCg -3' miRNA: 3'- cCGACCGAGGc-CGGUGGGaaaGAa---GG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 34760 | 0.73 | 0.252539 |
|
Target: 5'- gGGCUGGcCUUCGGCCuugGCCU--UCgUCCa -3' miRNA: 3'- -CCGACC-GAGGCCGG---UGGGaaAGaAGG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 30089 | 0.73 | 0.246138 |
|
Target: 5'- uGCUGGCUcagaaggacgCCGGCCGCCUccUCUacacggacgccaUCCg -3' miRNA: 3'- cCGACCGA----------GGCCGGUGGGaaAGA------------AGG- -5' |
|||||||
| 11421 | 5' | -57.1 | NC_003085.1 | + | 41098 | 1.15 | 0.000232 |
|
Target: 5'- cGGCUGGCUCCGGCCACCCUUUCUUCCa -3' miRNA: 3'- -CCGACCGAGGCCGGUGGGAAAGAAGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home