Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11421 | 5' | -57.1 | NC_003085.1 | + | 24307 | 0.68 | 0.467688 |
Target: 5'- aGGCcacGGUcgCCGGCCACaCCgcgCUUCg -3' miRNA: 3'- -CCGa--CCGa-GGCCGGUG-GGaaaGAAGg -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 24142 | 0.66 | 0.572083 |
Target: 5'- cGGCUGGUacUCCGGCUAUgaCgugCUaCCg -3' miRNA: 3'- -CCGACCG--AGGCCGGUGg-GaaaGAaGG- -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 23224 | 0.67 | 0.53994 |
Target: 5'- gGGCU-GCUCCagacGGCCGCCgCg--CUUCg -3' miRNA: 3'- -CCGAcCGAGG----CCGGUGG-GaaaGAAGg -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 13558 | 0.66 | 0.615579 |
Target: 5'- cGGCUGGCcgUGGCaugGCCCUgggacUCCg -3' miRNA: 3'- -CCGACCGagGCCGg--UGGGAaaga-AGG- -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 8623 | 0.66 | 0.582905 |
Target: 5'- aGGUUGGCcagcCCGGCCGCCg--UCa--- -3' miRNA: 3'- -CCGACCGa---GGCCGGUGGgaaAGaagg -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 6697 | 0.67 | 0.550593 |
Target: 5'- aGC-GGCUUgCGGCCGCCCUgca--CCg -3' miRNA: 3'- cCGaCCGAG-GCCGGUGGGAaagaaGG- -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 6374 | 0.7 | 0.382762 |
Target: 5'- uGCUGGCggCCGGUCG---UUUCUUCCu -3' miRNA: 3'- cCGACCGa-GGCCGGUgggAAAGAAGG- -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 2630 | 0.71 | 0.301215 |
Target: 5'- cGCUGGCUCCcaGCUACCCg--CUugggCCg -3' miRNA: 3'- cCGACCGAGGc-CGGUGGGaaaGAa---GG- -5' |
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11421 | 5' | -57.1 | NC_003085.1 | + | 2310 | 0.66 | 0.572083 |
Target: 5'- cGCUGGCcugccucgccaCCGGCCGCCg---CUUCa -3' miRNA: 3'- cCGACCGa----------GGCCGGUGGgaaaGAAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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