Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11422 | 5' | -55.5 | NC_003085.1 | + | 35118 | 0.67 | 0.604186 |
Target: 5'- uGGCAGGUCcgGccccuCGUCuucucCUGCCUUCg -3' miRNA: 3'- cCCGUUCAGuaCc----GCAGu----GGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 28381 | 0.66 | 0.659715 |
Target: 5'- uGGCAGGaC-UGGcCGUCcuuACCGuCCUUCg -3' miRNA: 3'- cCCGUUCaGuACC-GCAG---UGGC-GGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 708 | 0.66 | 0.670785 |
Target: 5'- gGGGCAAcuccgCGUGGCGccugacgCGCCGCUc-- -3' miRNA: 3'- -CCCGUUca---GUACCGCa------GUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 38255 | 0.66 | 0.681817 |
Target: 5'- cGGuuGCAcGUCAUGGCGU-GCCuuCCUUCc -3' miRNA: 3'- -CC--CGUuCAGUACCGCAgUGGc-GGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 17966 | 0.66 | 0.681817 |
Target: 5'- uGGCGguAGUUcaGGUGUCugCGCCa-- -3' miRNA: 3'- cCCGU--UCAGuaCCGCAGugGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 5925 | 0.68 | 0.549251 |
Target: 5'- -cGCAAG-C-UGGaCG-CGCCGCCUUCg -3' miRNA: 3'- ccCGUUCaGuACC-GCaGUGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 40924 | 1.12 | 0.000471 |
Target: 5'- gGGGCAAGUCAUGGCGUCACCGCCUUCg -3' miRNA: 3'- -CCCGUUCAGUACCGCAGUGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 47720 | 0.74 | 0.247502 |
Target: 5'- aGGGCGGGUCcgugacgAUGGCGUCuacugacuCUGCCUg- -3' miRNA: 3'- -CCCGUUCAG-------UACCGCAGu-------GGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 32908 | 0.71 | 0.379192 |
Target: 5'- cGGGCGccacgcAGU--UGGaGUCGCUGCCUUCg -3' miRNA: 3'- -CCCGU------UCAguACCgCAGUGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 35639 | 0.7 | 0.445136 |
Target: 5'- uGGGCGGcgucugcacGUCAUGGCGcCACCuCCa-- -3' miRNA: 3'- -CCCGUU---------CAGUACCGCaGUGGcGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 27929 | 0.68 | 0.549251 |
Target: 5'- cGGU-AGUCAcgcagGGCGUCAgCGCCg-- -3' miRNA: 3'- cCCGuUCAGUa----CCGCAGUgGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 43520 | 0.67 | 0.593114 |
Target: 5'- uGGCAucuGcCGcGGCGUguCCGUCUUCg -3' miRNA: 3'- cCCGUu--CaGUaCCGCAguGGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 33800 | 0.71 | 0.353005 |
Target: 5'- uGGGCAAccuucagcauGUCAaacgUGGCGUCGCgCuCCUUCu -3' miRNA: 3'- -CCCGUU----------CAGU----ACCGCAGUG-GcGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 24440 | 0.67 | 0.593114 |
Target: 5'- -cGCGGGUgAUGGUGcccagCGgCGCCUUCu -3' miRNA: 3'- ccCGUUCAgUACCGCa----GUgGCGGAAG- -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 10027 | 0.68 | 0.549251 |
Target: 5'- cGGGCAA-UCAUGGUGcgggaAUCGCCUg- -3' miRNA: 3'- -CCCGUUcAGUACCGCag---UGGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 43890 | 0.72 | 0.320123 |
Target: 5'- aGGGCGuAGaCGUGGCG-CACCGUCg-- -3' miRNA: 3'- -CCCGU-UCaGUACCGCaGUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 14917 | 0.67 | 0.571081 |
Target: 5'- cGGGCcGGcUgGUGGCGcUCGCgGCCg-- -3' miRNA: 3'- -CCCGuUC-AgUACCGC-AGUGgCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 21890 | 0.67 | 0.625281 |
Target: 5'- uGGcCGGGUCcgugcccugccagAUGGCGacgUCACCGCCg-- -3' miRNA: 3'- cCC-GUUCAG-------------UACCGC---AGUGGCGGaag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 25263 | 0.66 | 0.659715 |
Target: 5'- cGGGCGucGUCGUcGGCG-CGcCCGUCUa- -3' miRNA: 3'- -CCCGUu-CAGUA-CCGCaGU-GGCGGAag -5' |
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11422 | 5' | -55.5 | NC_003085.1 | + | 25559 | 0.67 | 0.593114 |
Target: 5'- cGGGCAGaagCAggcgGGCGcggACCGCCUUUu -3' miRNA: 3'- -CCCGUUca-GUa---CCGCag-UGGCGGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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