miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 40605 1.11 0.000513
Target:  5'- gUGGAUGCCGAUGCACGUCAUGGCCGCc -3'
miRNA:   3'- -ACCUACGGCUACGUGCAGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1292 0.77 0.13179
Target:  5'- gGGAUGCCGGaGUucuccCG-CGUGGCCGCg -3'
miRNA:   3'- aCCUACGGCUaCGu----GCaGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1508 0.74 0.215503
Target:  5'- ----gGCCGGUGCGCcUCAcGGCCGCc -3'
miRNA:   3'- accuaCGGCUACGUGcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 34556 0.74 0.227207
Target:  5'- cUGGcgGCCGGUGCGCaacuccUCaAUGGCgGCg -3'
miRNA:   3'- -ACCuaCGGCUACGUGc-----AG-UACCGgCG- -5'
11423 3' -56.2 NC_003085.1 + 9073 0.73 0.251577
Target:  5'- uUGGAUGCCGGccaGCgccagagGCGUCAgcGCCGCg -3'
miRNA:   3'- -ACCUACGGCUa--CG-------UGCAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 22565 0.73 0.265571
Target:  5'- -cGAUGCCGAUGacuuCACGggCGUgugGGCCGCg -3'
miRNA:   3'- acCUACGGCUAC----GUGCa-GUA---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 38246 0.73 0.265571
Target:  5'- uUGG--GCUGAcgguUGCACGUCAUGGCgUGCc -3'
miRNA:   3'- -ACCuaCGGCU----ACGUGCAGUACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 29769 0.73 0.272453
Target:  5'- -aGAUGCCGccGCGCGcCuccagGGCCGCc -3'
miRNA:   3'- acCUACGGCuaCGUGCaGua---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 36215 0.72 0.279478
Target:  5'- cUGGuacUGCuCGAacgucaucgaguUGCACGUCAUcGCCGCa -3'
miRNA:   3'- -ACCu--ACG-GCU------------ACGUGCAGUAcCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 47635 0.72 0.286645
Target:  5'- aUGGA-GCCGGUGCGCuUCAacaggGGgCGCa -3'
miRNA:   3'- -ACCUaCGGCUACGUGcAGUa----CCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 45741 0.72 0.29322
Target:  5'- cGGucAUGCUGAcgccucgcgugGCACGUCgcgcugcGUGGCCGCa -3'
miRNA:   3'- aCC--UACGGCUa----------CGUGCAG-------UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 43900 0.72 0.293958
Target:  5'- gGGAUGUgGGUcuucaGCAUGUCcgccaaccggAUGGCCGCc -3'
miRNA:   3'- aCCUACGgCUA-----CGUGCAG----------UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 26375 0.71 0.332693
Target:  5'- cGGAUGCCGuUGC---UCG-GGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGugcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 42759 0.71 0.340876
Target:  5'- aUGGGUG-CGGUGCAgGgc--GGCCGCa -3'
miRNA:   3'- -ACCUACgGCUACGUgCaguaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 25304 0.71 0.340876
Target:  5'- gUGGGgccGUCGGUaGCACGUCAUaGCCGg -3'
miRNA:   3'- -ACCUa--CGGCUA-CGUGCAGUAcCGGCg -5'
11423 3' -56.2 NC_003085.1 + 40960 0.71 0.348364
Target:  5'- ----cGCUGGUGCGCGUCGUacuggcgGGCCaGCg -3'
miRNA:   3'- accuaCGGCUACGUGCAGUA-------CCGG-CG- -5'
11423 3' -56.2 NC_003085.1 + 31422 0.71 0.349203
Target:  5'- gGGAaGUgGAUGCGCGUCGucuacacggaUGGCaCGUa -3'
miRNA:   3'- aCCUaCGgCUACGUGCAGU----------ACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 35638 0.7 0.366289
Target:  5'- cUGGgcGgCGucUGCACGUCAUGG-CGCc -3'
miRNA:   3'- -ACCuaCgGCu-ACGUGCAGUACCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 12022 0.7 0.383942
Target:  5'- cUGGcgcaccUGCCGGugcUGCGCGacuUCGUGcGCCGCu -3'
miRNA:   3'- -ACCu-----ACGGCU---ACGUGC---AGUAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19441 0.7 0.383942
Target:  5'- cUGGAaGCCGcgGacgACGUCGccaaGGCCGCc -3'
miRNA:   3'- -ACCUaCGGCuaCg--UGCAGUa---CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.