miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 46007 0.67 0.585561
Target:  5'- aGGGUgacgacgGCCGGgcaggGCAUGUCAgugGGCUcuGCg -3'
miRNA:   3'- aCCUA-------CGGCUa----CGUGCAGUa--CCGG--CG- -5'
11423 3' -56.2 NC_003085.1 + 12397 0.69 0.459922
Target:  5'- cGGGUGCUGcUGCuCGacccggCggGGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGuGCa-----GuaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 6014 0.69 0.469975
Target:  5'- cUGGgcGCgGAUGUACGcCcgGacGCCGCg -3'
miRNA:   3'- -ACCuaCGgCUACGUGCaGuaC--CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 40128 0.68 0.500782
Target:  5'- cUGGuccugGCCGccGCGCGUC-UGaGUCGCu -3'
miRNA:   3'- -ACCua---CGGCuaCGUGCAGuAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19995 0.67 0.532447
Target:  5'- cGGcccUGCCGccGU-CGUCGUggGGCCGCa -3'
miRNA:   3'- aCCu--ACGGCuaCGuGCAGUA--CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39479 0.67 0.543164
Target:  5'- ---cUGCCGAcgUGCGCGUCGaGG-CGCu -3'
miRNA:   3'- accuACGGCU--ACGUGCAGUaCCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 20188 0.67 0.553952
Target:  5'- cGaGA-GCCGGUGCACGacugGGCCaGCc -3'
miRNA:   3'- aC-CUaCGGCUACGUGCaguaCCGG-CG- -5'
11423 3' -56.2 NC_003085.1 + 11515 0.67 0.553952
Target:  5'- cGGGUG-UGGUGCG-GUUAccGGCCGCg -3'
miRNA:   3'- aCCUACgGCUACGUgCAGUa-CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 33361 0.67 0.564802
Target:  5'- aGGAUGUCGcccuucaGCGUCAUcGuGCCGCc -3'
miRNA:   3'- aCCUACGGCuacg---UGCAGUA-C-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 46659 0.69 0.430468
Target:  5'- aGuGAUGCCGAgGCGCuUCGccGCCGCc -3'
miRNA:   3'- aC-CUACGGCUaCGUGcAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 4224 0.69 0.420898
Target:  5'- cGGGUuaCGcUGaGCGUCAgccgGGCCGCa -3'
miRNA:   3'- aCCUAcgGCuACgUGCAGUa---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12823 0.69 0.420898
Target:  5'- cGGuccggGCgGAUGCGC-UguUGGCCGCc -3'
miRNA:   3'- aCCua---CGgCUACGUGcAguACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1508 0.74 0.215503
Target:  5'- ----gGCCGGUGCGCcUCAcGGCCGCc -3'
miRNA:   3'- accuaCGGCUACGUGcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 22565 0.73 0.265571
Target:  5'- -cGAUGCCGAUGacuuCACGggCGUgugGGCCGCg -3'
miRNA:   3'- acCUACGGCUAC----GUGCa-GUA---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 43900 0.72 0.293958
Target:  5'- gGGAUGUgGGUcuucaGCAUGUCcgccaaccggAUGGCCGCc -3'
miRNA:   3'- aCCUACGgCUA-----CGUGCAG----------UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 26375 0.71 0.332693
Target:  5'- cGGAUGCCGuUGC---UCG-GGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGugcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 31422 0.71 0.349203
Target:  5'- gGGAaGUgGAUGCGCGUCGucuacacggaUGGCaCGUa -3'
miRNA:   3'- aCCUaCGgCUACGUGCAGU----------ACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 12022 0.7 0.383942
Target:  5'- cUGGcgcaccUGCCGGugcUGCGCGacuUCGUGcGCCGCu -3'
miRNA:   3'- -ACCu-----ACGGCU---ACGUGC---AGUAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39504 0.7 0.405858
Target:  5'- cGaGAaGCCGGUGCGCcucgucgcuggcaucGUCcUGGCCGUu -3'
miRNA:   3'- aC-CUaCGGCUACGUG---------------CAGuACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 5412 0.7 0.411459
Target:  5'- gUGGAUGgaGggGCGCGUCAc-GCUGCg -3'
miRNA:   3'- -ACCUACggCuaCGUGCAGUacCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.