miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 35854 0.66 0.652855
Target:  5'- --cGUGCCccacuuGUGCcuugGCGUCAUGGCgCGCc -3'
miRNA:   3'- accUACGGc-----UACG----UGCAGUACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 19574 0.69 0.448995
Target:  5'- aGGGUGCCGAggccaaucaacUGCuccaacucuucggGCGUCAUcuGCUGCa -3'
miRNA:   3'- aCCUACGGCU-----------ACG-------------UGCAGUAc-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 35638 0.7 0.366289
Target:  5'- cUGGgcGgCGucUGCACGUCAUGG-CGCc -3'
miRNA:   3'- -ACCuaCgGCu-ACGUGCAGUACCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 40605 1.11 0.000513
Target:  5'- gUGGAUGCCGAUGCACGUCAUGGCCGCc -3'
miRNA:   3'- -ACCUACGGCUACGUGCAGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 30888 0.66 0.619708
Target:  5'- -cGAUGCUGAUGgacaGCG-CuUGGCCGUc -3'
miRNA:   3'- acCUACGGCUACg---UGCaGuACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 29798 0.66 0.619708
Target:  5'- aGGAggucGCCguaGAUGCugcccuUGUCGUGGCUGg -3'
miRNA:   3'- aCCUa---CGG---CUACGu-----GCAGUACCGGCg -5'
11423 3' -56.2 NC_003085.1 + 15952 0.66 0.608668
Target:  5'- gGGAUGgCGAUG-ACGUCAcuucGCCGg -3'
miRNA:   3'- aCCUACgGCUACgUGCAGUac--CGGCg -5'
11423 3' -56.2 NC_003085.1 + 24502 0.66 0.597648
Target:  5'- aGGAUGCCGccGUAcucCGUCGUcugguaGGCCa- -3'
miRNA:   3'- aCCUACGGCuaCGU---GCAGUA------CCGGcg -5'
11423 3' -56.2 NC_003085.1 + 5355 0.67 0.575706
Target:  5'- aGGcgGaaGAgGCAuucCGUCGgcUGGCCGCg -3'
miRNA:   3'- aCCuaCggCUaCGU---GCAGU--ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 21815 0.68 0.500782
Target:  5'- -cGGUGgCGAUGCgGCGUCccgcUGGCgGCg -3'
miRNA:   3'- acCUACgGCUACG-UGCAGu---ACCGgCG- -5'
11423 3' -56.2 NC_003085.1 + 27809 0.67 0.532447
Target:  5'- cGGAugcUGCCGAacuucGCcuucacccccuGCGcCAUGGCCGUc -3'
miRNA:   3'- aCCU---ACGGCUa----CG-----------UGCaGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 26620 0.67 0.575706
Target:  5'- cGGAcucuccuucgcUGCCGAcgugGCAaucggaGUCggGGCCGUc -3'
miRNA:   3'- aCCU-----------ACGGCUa---CGUg-----CAGuaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 32557 0.66 0.641811
Target:  5'- cGGggGCUGggGUGCGagGUGGCucauCGCu -3'
miRNA:   3'- aCCuaCGGCuaCGUGCagUACCG----GCG- -5'
11423 3' -56.2 NC_003085.1 + 14917 0.68 0.521806
Target:  5'- cGGGccgGCUGGUgGCGC-UCGcGGCCGCu -3'
miRNA:   3'- aCCUa--CGGCUA-CGUGcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 6307 0.66 0.641811
Target:  5'- cUGGAgcagGCCGAgcgggaacCGCGcagCAUGGgCGCg -3'
miRNA:   3'- -ACCUa---CGGCUac------GUGCa--GUACCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 423 0.66 0.597648
Target:  5'- gUGGAguugGCCGAaGa--GUCGcUGGUCGCg -3'
miRNA:   3'- -ACCUa---CGGCUaCgugCAGU-ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 25746 0.68 0.509148
Target:  5'- gUGGggGCCGggGC-CGUCuugacggaggaGGCUGCu -3'
miRNA:   3'- -ACCuaCGGCuaCGuGCAGua---------CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19441 0.7 0.383942
Target:  5'- cUGGAaGCCGcgGacgACGUCGccaaGGCCGCc -3'
miRNA:   3'- -ACCUaCGGCuaCg--UGCAGUa---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19923 0.66 0.624127
Target:  5'- cUGGuUGCUGGccUGCcacuggcccauguucGCGUugucuggccCAUGGCCGCg -3'
miRNA:   3'- -ACCuACGGCU--ACG---------------UGCA---------GUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1676 0.66 0.618603
Target:  5'- aGGAUugucgugGCCGAaGCACaaGUCGccugcgagcgccUGGCCGUc -3'
miRNA:   3'- aCCUA-------CGGCUaCGUG--CAGU------------ACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.