miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 423 0.66 0.597648
Target:  5'- gUGGAguugGCCGAaGa--GUCGcUGGUCGCg -3'
miRNA:   3'- -ACCUa---CGGCUaCgugCAGU-ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1292 0.77 0.13179
Target:  5'- gGGAUGCCGGaGUucuccCG-CGUGGCCGCg -3'
miRNA:   3'- aCCUACGGCUaCGu----GCaGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1508 0.74 0.215503
Target:  5'- ----gGCCGGUGCGCcUCAcGGCCGCc -3'
miRNA:   3'- accuaCGGCUACGUGcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 1676 0.66 0.618603
Target:  5'- aGGAUugucgugGCCGAaGCACaaGUCGccugcgagcgccUGGCCGUc -3'
miRNA:   3'- aCCUA-------CGGCUaCGUG--CAGU------------ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 4224 0.69 0.420898
Target:  5'- cGGGUuaCGcUGaGCGUCAgccgGGCCGCa -3'
miRNA:   3'- aCCUAcgGCuACgUGCAGUa---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 5355 0.67 0.575706
Target:  5'- aGGcgGaaGAgGCAuucCGUCGgcUGGCCGCg -3'
miRNA:   3'- aCCuaCggCUaCGU---GCAGU--ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 5412 0.7 0.411459
Target:  5'- gUGGAUGgaGggGCGCGUCAc-GCUGCg -3'
miRNA:   3'- -ACCUACggCuaCGUGCAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 6014 0.69 0.469975
Target:  5'- cUGGgcGCgGAUGUACGcCcgGacGCCGCg -3'
miRNA:   3'- -ACCuaCGgCUACGUGCaGuaC--CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 6307 0.66 0.641811
Target:  5'- cUGGAgcagGCCGAgcgggaacCGCGcagCAUGGgCGCg -3'
miRNA:   3'- -ACCUa---CGGCUac------GUGCa--GUACCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 8118 0.66 0.597648
Target:  5'- uUGGgcGCUGAUG-ACGUgGUGGaCCuGCu -3'
miRNA:   3'- -ACCuaCGGCUACgUGCAgUACC-GG-CG- -5'
11423 3' -56.2 NC_003085.1 + 9073 0.73 0.251577
Target:  5'- uUGGAUGCCGGccaGCgccagagGCGUCAgcGCCGCg -3'
miRNA:   3'- -ACCUACGGCUa--CG-------UGCAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 11515 0.67 0.553952
Target:  5'- cGGGUG-UGGUGCG-GUUAccGGCCGCg -3'
miRNA:   3'- aCCUACgGCUACGUgCAGUa-CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12022 0.7 0.383942
Target:  5'- cUGGcgcaccUGCCGGugcUGCGCGacuUCGUGcGCCGCu -3'
miRNA:   3'- -ACCu-----ACGGCU---ACGUGC---AGUAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12152 0.66 0.608668
Target:  5'- gGGAaGUCGcUGCGaGUCuggaGUGGCCGUg -3'
miRNA:   3'- aCCUaCGGCuACGUgCAG----UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12397 0.69 0.459922
Target:  5'- cGGGUGCUGcUGCuCGacccggCggGGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGuGCa-----GuaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12823 0.69 0.420898
Target:  5'- cGGuccggGCgGAUGCGC-UguUGGCCGCc -3'
miRNA:   3'- aCCua---CGgCUACGUGcAguACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 14031 0.66 0.619708
Target:  5'- aGGAcUGCCGAgcuacUGCGCGacggCGUGuCCGUc -3'
miRNA:   3'- aCCU-ACGGCU-----ACGUGCa---GUACcGGCG- -5'
11423 3' -56.2 NC_003085.1 + 14917 0.68 0.521806
Target:  5'- cGGGccgGCUGGUgGCGC-UCGcGGCCGCu -3'
miRNA:   3'- aCCUa--CGGCUA-CGUGcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 15952 0.66 0.608668
Target:  5'- gGGAUGgCGAUG-ACGUCAcuucGCCGg -3'
miRNA:   3'- aCCUACgGCUACgUGCAGUac--CGGCg -5'
11423 3' -56.2 NC_003085.1 + 16149 0.66 0.630759
Target:  5'- cGGAacgccugaaUGaCCGugacGC-CGUgGUGGCCGCg -3'
miRNA:   3'- aCCU---------AC-GGCua--CGuGCAgUACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.