Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11423 | 3' | -56.2 | NC_003085.1 | + | 19441 | 0.7 | 0.383942 |
Target: 5'- cUGGAaGCCGcgGacgACGUCGccaaGGCCGCc -3' miRNA: 3'- -ACCUaCGGCuaCg--UGCAGUa---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 19574 | 0.69 | 0.448995 |
Target: 5'- aGGGUGCCGAggccaaucaacUGCuccaacucuucggGCGUCAUcuGCUGCa -3' miRNA: 3'- aCCUACGGCU-----------ACG-------------UGCAGUAc-CGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 19923 | 0.66 | 0.624127 |
Target: 5'- cUGGuUGCUGGccUGCcacuggcccauguucGCGUugucuggccCAUGGCCGCg -3' miRNA: 3'- -ACCuACGGCU--ACG---------------UGCA---------GUACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 19995 | 0.67 | 0.532447 |
Target: 5'- cGGcccUGCCGccGU-CGUCGUggGGCCGCa -3' miRNA: 3'- aCCu--ACGGCuaCGuGCAGUA--CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 20188 | 0.67 | 0.553952 |
Target: 5'- cGaGA-GCCGGUGCACGacugGGCCaGCc -3' miRNA: 3'- aC-CUaCGGCUACGUGCaguaCCGG-CG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 21815 | 0.68 | 0.500782 |
Target: 5'- -cGGUGgCGAUGCgGCGUCccgcUGGCgGCg -3' miRNA: 3'- acCUACgGCUACG-UGCAGu---ACCGgCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 22565 | 0.73 | 0.265571 |
Target: 5'- -cGAUGCCGAUGacuuCACGggCGUgugGGCCGCg -3' miRNA: 3'- acCUACGGCUAC----GUGCa-GUA---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 23308 | 0.66 | 0.630759 |
Target: 5'- gGGGUGCCgcuggaGAUGCuugACGcCGcucUGGCCGg -3' miRNA: 3'- aCCUACGG------CUACG---UGCaGU---ACCGGCg -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 24502 | 0.66 | 0.597648 |
Target: 5'- aGGAUGCCGccGUAcucCGUCGUcugguaGGCCa- -3' miRNA: 3'- aCCUACGGCuaCGU---GCAGUA------CCGGcg -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 25304 | 0.71 | 0.340876 |
Target: 5'- gUGGGgccGUCGGUaGCACGUCAUaGCCGg -3' miRNA: 3'- -ACCUa--CGGCUA-CGUGCAGUAcCGGCg -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 25746 | 0.68 | 0.509148 |
Target: 5'- gUGGggGCCGggGC-CGUCuugacggaggaGGCUGCu -3' miRNA: 3'- -ACCuaCGGCuaCGuGCAGua---------CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 26375 | 0.71 | 0.332693 |
Target: 5'- cGGAUGCCGuUGC---UCG-GGCCGCu -3' miRNA: 3'- aCCUACGGCuACGugcAGUaCCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 26620 | 0.67 | 0.575706 |
Target: 5'- cGGAcucuccuucgcUGCCGAcgugGCAaucggaGUCggGGCCGUc -3' miRNA: 3'- aCCU-----------ACGGCUa---CGUg-----CAGuaCCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 27809 | 0.67 | 0.532447 |
Target: 5'- cGGAugcUGCCGAacuucGCcuucacccccuGCGcCAUGGCCGUc -3' miRNA: 3'- aCCU---ACGGCUa----CG-----------UGCaGUACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 29769 | 0.73 | 0.272453 |
Target: 5'- -aGAUGCCGccGCGCGcCuccagGGCCGCc -3' miRNA: 3'- acCUACGGCuaCGUGCaGua---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 29798 | 0.66 | 0.619708 |
Target: 5'- aGGAggucGCCguaGAUGCugcccuUGUCGUGGCUGg -3' miRNA: 3'- aCCUa---CGG---CUACGu-----GCAGUACCGGCg -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 30888 | 0.66 | 0.619708 |
Target: 5'- -cGAUGCUGAUGgacaGCG-CuUGGCCGUc -3' miRNA: 3'- acCUACGGCUACg---UGCaGuACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 31422 | 0.71 | 0.349203 |
Target: 5'- gGGAaGUgGAUGCGCGUCGucuacacggaUGGCaCGUa -3' miRNA: 3'- aCCUaCGgCUACGUGCAGU----------ACCG-GCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 32142 | 0.66 | 0.651751 |
Target: 5'- gGGcgGCUGGUgGCgcgguggguuacgGCGUCGgccaGGCUGCg -3' miRNA: 3'- aCCuaCGGCUA-CG-------------UGCAGUa---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 32557 | 0.66 | 0.641811 |
Target: 5'- cGGggGCUGggGUGCGagGUGGCucauCGCu -3' miRNA: 3'- aCCuaCGGCuaCGUGCagUACCG----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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