miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 26375 0.71 0.332693
Target:  5'- cGGAUGCCGuUGC---UCG-GGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGugcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 31422 0.71 0.349203
Target:  5'- gGGAaGUgGAUGCGCGUCGucuacacggaUGGCaCGUa -3'
miRNA:   3'- aCCUaCGgCUACGUGCAGU----------ACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 12022 0.7 0.383942
Target:  5'- cUGGcgcaccUGCCGGugcUGCGCGacuUCGUGcGCCGCu -3'
miRNA:   3'- -ACCu-----ACGGCU---ACGUGC---AGUAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39504 0.7 0.405858
Target:  5'- cGaGAaGCCGGUGCGCcucgucgcuggcaucGUCcUGGCCGUu -3'
miRNA:   3'- aC-CUaCGGCUACGUG---------------CAGuACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 6014 0.69 0.469975
Target:  5'- cUGGgcGCgGAUGUACGcCcgGacGCCGCg -3'
miRNA:   3'- -ACCuaCGgCUACGUGCaGuaC--CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12397 0.69 0.459922
Target:  5'- cGGGUGCUGcUGCuCGacccggCggGGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGuGCa-----GuaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 46659 0.69 0.430468
Target:  5'- aGuGAUGCCGAgGCGCuUCGccGCCGCc -3'
miRNA:   3'- aC-CUACGGCUaCGUGcAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 4224 0.69 0.420898
Target:  5'- cGGGUuaCGcUGaGCGUCAgccgGGCCGCa -3'
miRNA:   3'- aCCUAcgGCuACgUGCAGUa---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12823 0.69 0.420898
Target:  5'- cGGuccggGCgGAUGCGC-UguUGGCCGCc -3'
miRNA:   3'- aCCua---CGgCUACGUGcAguACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 5412 0.7 0.411459
Target:  5'- gUGGAUGgaGggGCGCGUCAc-GCUGCg -3'
miRNA:   3'- -ACCUACggCuaCGUGCAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 423 0.66 0.597648
Target:  5'- gUGGAguugGCCGAaGa--GUCGcUGGUCGCg -3'
miRNA:   3'- -ACCUa---CGGCUaCgugCAGU-ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 24502 0.66 0.597648
Target:  5'- aGGAUGCCGccGUAcucCGUCGUcugguaGGCCa- -3'
miRNA:   3'- aCCUACGGCuaCGU---GCAGUA------CCGGcg -5'
11423 3' -56.2 NC_003085.1 + 15952 0.66 0.608668
Target:  5'- gGGAUGgCGAUG-ACGUCAcuucGCCGg -3'
miRNA:   3'- aCCUACgGCUACgUGCAGUac--CGGCg -5'
11423 3' -56.2 NC_003085.1 + 1676 0.66 0.618603
Target:  5'- aGGAUugucgugGCCGAaGCACaaGUCGccugcgagcgccUGGCCGUc -3'
miRNA:   3'- aCCUA-------CGGCUaCGUG--CAGU------------ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 29798 0.66 0.619708
Target:  5'- aGGAggucGCCguaGAUGCugcccuUGUCGUGGCUGg -3'
miRNA:   3'- aCCUa---CGG---CUACGu-----GCAGUACCGGCg -5'
11423 3' -56.2 NC_003085.1 + 30888 0.66 0.619708
Target:  5'- -cGAUGCUGAUGgacaGCG-CuUGGCCGUc -3'
miRNA:   3'- acCUACGGCUACg---UGCaGuACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19923 0.66 0.624127
Target:  5'- cUGGuUGCUGGccUGCcacuggcccauguucGCGUugucuggccCAUGGCCGCg -3'
miRNA:   3'- -ACCuACGGCU--ACG---------------UGCA---------GUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 6307 0.66 0.641811
Target:  5'- cUGGAgcagGCCGAgcgggaacCGCGcagCAUGGgCGCg -3'
miRNA:   3'- -ACCUa---CGGCUac------GUGCa--GUACCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 32557 0.66 0.641811
Target:  5'- cGGggGCUGggGUGCGagGUGGCucauCGCu -3'
miRNA:   3'- aCCuaCGGCuaCGUGCagUACCG----GCG- -5'
11423 3' -56.2 NC_003085.1 + 40605 1.11 0.000513
Target:  5'- gUGGAUGCCGAUGCACGUCAUGGCCGCc -3'
miRNA:   3'- -ACCUACGGCUACGUGCAGUACCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.