miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 48259 0.66 0.597648
Target:  5'- cGGc-GCCGGggugagGUugGUCaAUGGUCGCc -3'
miRNA:   3'- aCCuaCGGCUa-----CGugCAG-UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 47635 0.72 0.286645
Target:  5'- aUGGA-GCCGGUGCGCuUCAacaggGGgCGCa -3'
miRNA:   3'- -ACCUaCGGCUACGUGcAGUa----CCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 46659 0.69 0.430468
Target:  5'- aGuGAUGCCGAgGCGCuUCGccGCCGCc -3'
miRNA:   3'- aC-CUACGGCUaCGUGcAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 46007 0.67 0.585561
Target:  5'- aGGGUgacgacgGCCGGgcaggGCAUGUCAgugGGCUcuGCg -3'
miRNA:   3'- aCCUA-------CGGCUa----CGUGCAGUa--CCGG--CG- -5'
11423 3' -56.2 NC_003085.1 + 45741 0.72 0.29322
Target:  5'- cGGucAUGCUGAcgccucgcgugGCACGUCgcgcugcGUGGCCGCa -3'
miRNA:   3'- aCC--UACGGCUa----------CGUGCAG-------UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 43900 0.72 0.293958
Target:  5'- gGGAUGUgGGUcuucaGCAUGUCcgccaaccggAUGGCCGCc -3'
miRNA:   3'- aCCUACGgCUA-----CGUGCAG----------UACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 42759 0.71 0.340876
Target:  5'- aUGGGUG-CGGUGCAgGgc--GGCCGCa -3'
miRNA:   3'- -ACCUACgGCUACGUgCaguaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 41116 0.66 0.597648
Target:  5'- gUGGAggcccagGCCGA-GCGCGgCAccccguacugcUGGCCGg -3'
miRNA:   3'- -ACCUa------CGGCUaCGUGCaGU-----------ACCGGCg -5'
11423 3' -56.2 NC_003085.1 + 40960 0.71 0.348364
Target:  5'- ----cGCUGGUGCGCGUCGUacuggcgGGCCaGCg -3'
miRNA:   3'- accuaCGGCUACGUGCAGUA-------CCGG-CG- -5'
11423 3' -56.2 NC_003085.1 + 40605 1.11 0.000513
Target:  5'- gUGGAUGCCGAUGCACGUCAUGGCCGCc -3'
miRNA:   3'- -ACCUACGGCUACGUGCAGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 40128 0.68 0.500782
Target:  5'- cUGGuccugGCCGccGCGCGUC-UGaGUCGCu -3'
miRNA:   3'- -ACCua---CGGCuaCGUGCAGuAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39783 0.67 0.532447
Target:  5'- gGGAcgccaGCCGGUGCucgACGUUGgcGGCCGUc -3'
miRNA:   3'- aCCUa----CGGCUACG---UGCAGUa-CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39504 0.7 0.405858
Target:  5'- cGaGAaGCCGGUGCGCcucgucgcuggcaucGUCcUGGCCGUu -3'
miRNA:   3'- aC-CUaCGGCUACGUG---------------CAGuACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39479 0.67 0.543164
Target:  5'- ---cUGCCGAcgUGCGCGUCGaGG-CGCu -3'
miRNA:   3'- accuACGGCU--ACGUGCAGUaCCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 38246 0.73 0.265571
Target:  5'- uUGG--GCUGAcgguUGCACGUCAUGGCgUGCc -3'
miRNA:   3'- -ACCuaCGGCU----ACGUGCAGUACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 36215 0.72 0.279478
Target:  5'- cUGGuacUGCuCGAacgucaucgaguUGCACGUCAUcGCCGCa -3'
miRNA:   3'- -ACCu--ACG-GCU------------ACGUGCAGUAcCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 35854 0.66 0.652855
Target:  5'- --cGUGCCccacuuGUGCcuugGCGUCAUGGCgCGCc -3'
miRNA:   3'- accUACGGc-----UACG----UGCAGUACCG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 35638 0.7 0.366289
Target:  5'- cUGGgcGgCGucUGCACGUCAUGG-CGCc -3'
miRNA:   3'- -ACCuaCgGCu-ACGUGCAGUACCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 34976 0.66 0.597648
Target:  5'- aGGAaGCCGAUG-ACcUCGUGcGCaCGCu -3'
miRNA:   3'- aCCUaCGGCUACgUGcAGUAC-CG-GCG- -5'
11423 3' -56.2 NC_003085.1 + 34556 0.74 0.227207
Target:  5'- cUGGcgGCCGGUGCGCaacuccUCaAUGGCgGCg -3'
miRNA:   3'- -ACCuaCGGCUACGUGc-----AG-UACCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.