miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11423 3' -56.2 NC_003085.1 + 26620 0.67 0.575706
Target:  5'- cGGAcucuccuucgcUGCCGAcgugGCAaucggaGUCggGGCCGUc -3'
miRNA:   3'- aCCU-----------ACGGCUa---CGUg-----CAGuaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 5355 0.67 0.575706
Target:  5'- aGGcgGaaGAgGCAuucCGUCGgcUGGCCGCg -3'
miRNA:   3'- aCCuaCggCUaCGU---GCAGU--ACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 33361 0.67 0.564802
Target:  5'- aGGAUGUCGcccuucaGCGUCAUcGuGCCGCc -3'
miRNA:   3'- aCCUACGGCuacg---UGCAGUA-C-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 20188 0.67 0.553952
Target:  5'- cGaGA-GCCGGUGCACGacugGGCCaGCc -3'
miRNA:   3'- aC-CUaCGGCUACGUGCaguaCCGG-CG- -5'
11423 3' -56.2 NC_003085.1 + 11515 0.67 0.553952
Target:  5'- cGGGUG-UGGUGCG-GUUAccGGCCGCg -3'
miRNA:   3'- aCCUACgGCUACGUgCAGUa-CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 39479 0.67 0.543164
Target:  5'- ---cUGCCGAcgUGCGCGUCGaGG-CGCu -3'
miRNA:   3'- accuACGGCU--ACGUGCAGUaCCgGCG- -5'
11423 3' -56.2 NC_003085.1 + 39783 0.67 0.532447
Target:  5'- gGGAcgccaGCCGGUGCucgACGUUGgcGGCCGUc -3'
miRNA:   3'- aCCUa----CGGCUACG---UGCAGUa-CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 27809 0.67 0.532447
Target:  5'- cGGAugcUGCCGAacuucGCcuucacccccuGCGcCAUGGCCGUc -3'
miRNA:   3'- aCCU---ACGGCUa----CG-----------UGCaGUACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19995 0.67 0.532447
Target:  5'- cGGcccUGCCGccGU-CGUCGUggGGCCGCa -3'
miRNA:   3'- aCCu--ACGGCuaCGuGCAGUA--CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 14917 0.68 0.521806
Target:  5'- cGGGccgGCUGGUgGCGC-UCGcGGCCGCu -3'
miRNA:   3'- aCCUa--CGGCUA-CGUGcAGUaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 25746 0.68 0.509148
Target:  5'- gUGGggGCCGggGC-CGUCuugacggaggaGGCUGCu -3'
miRNA:   3'- -ACCuaCGGCuaCGuGCAGua---------CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 40128 0.68 0.500782
Target:  5'- cUGGuccugGCCGccGCGCGUC-UGaGUCGCu -3'
miRNA:   3'- -ACCua---CGGCuaCGUGCAGuAC-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 21815 0.68 0.500782
Target:  5'- -cGGUGgCGAUGCgGCGUCccgcUGGCgGCg -3'
miRNA:   3'- acCUACgGCUACG-UGCAGu---ACCGgCG- -5'
11423 3' -56.2 NC_003085.1 + 6014 0.69 0.469975
Target:  5'- cUGGgcGCgGAUGUACGcCcgGacGCCGCg -3'
miRNA:   3'- -ACCuaCGgCUACGUGCaGuaC--CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12397 0.69 0.459922
Target:  5'- cGGGUGCUGcUGCuCGacccggCggGGCCGCu -3'
miRNA:   3'- aCCUACGGCuACGuGCa-----GuaCCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 19574 0.69 0.448995
Target:  5'- aGGGUGCCGAggccaaucaacUGCuccaacucuucggGCGUCAUcuGCUGCa -3'
miRNA:   3'- aCCUACGGCU-----------ACG-------------UGCAGUAc-CGGCG- -5'
11423 3' -56.2 NC_003085.1 + 46659 0.69 0.430468
Target:  5'- aGuGAUGCCGAgGCGCuUCGccGCCGCc -3'
miRNA:   3'- aC-CUACGGCUaCGUGcAGUacCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 12823 0.69 0.420898
Target:  5'- cGGuccggGCgGAUGCGC-UguUGGCCGCc -3'
miRNA:   3'- aCCua---CGgCUACGUGcAguACCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 4224 0.69 0.420898
Target:  5'- cGGGUuaCGcUGaGCGUCAgccgGGCCGCa -3'
miRNA:   3'- aCCUAcgGCuACgUGCAGUa---CCGGCG- -5'
11423 3' -56.2 NC_003085.1 + 5412 0.7 0.411459
Target:  5'- gUGGAUGgaGggGCGCGUCAc-GCUGCg -3'
miRNA:   3'- -ACCUACggCuaCGUGCAGUacCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.