miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 3' -56.4 NC_003085.1 + 32129 0.66 0.630319
Target:  5'- -gGugGUGcGACGGGGGCgGcUGGuGGCg -3'
miRNA:   3'- agCugCAU-CUGCUCCCGgU-ACC-UCGg -5'
11424 3' -56.4 NC_003085.1 + 41391 0.68 0.491599
Target:  5'- -gGugGUGGGUGAcGGCCGUguugucGGAGCCu -3'
miRNA:   3'- agCugCAUCUGCUcCCGGUA------CCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 1383 0.67 0.565146
Target:  5'- cCGACGUcugGGACGAGGuG-UAUGaGAGCg -3'
miRNA:   3'- aGCUGCA---UCUGCUCC-CgGUAC-CUCGg -5'
11424 3' -56.4 NC_003085.1 + 43762 0.67 0.575923
Target:  5'- -gGugGUGGGCGcGGGCU-UGGAcucaacaccgGCCa -3'
miRNA:   3'- agCugCAUCUGCuCCCGGuACCU----------CGG- -5'
11424 3' -56.4 NC_003085.1 + 17185 0.67 0.575923
Target:  5'- cUGACGggAGACGAgucccGGGCCAccGAGgCCu -3'
miRNA:   3'- aGCUGCa-UCUGCU-----CCCGGUacCUC-GG- -5'
11424 3' -56.4 NC_003085.1 + 11733 0.67 0.597604
Target:  5'- cUCGACGUGGugcuguCGAGGGgCAUGacacGCg -3'
miRNA:   3'- -AGCUGCAUCu-----GCUCCCgGUACcu--CGg -5'
11424 3' -56.4 NC_003085.1 + 40839 0.66 0.6194
Target:  5'- cUGACGgcGGcCGGGcuGGCCAaccUGGAGgCCa -3'
miRNA:   3'- aGCUGCauCU-GCUC--CCGGU---ACCUC-GG- -5'
11424 3' -56.4 NC_003085.1 + 18353 0.66 0.630319
Target:  5'- --uACG-GGGCGGugcaGGCCGUGGAGUCg -3'
miRNA:   3'- agcUGCaUCUGCUc---CCGGUACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 16306 0.66 0.630319
Target:  5'- -aGGCGccauGACGGGauGGCCcgGGAGUUg -3'
miRNA:   3'- agCUGCau--CUGCUC--CCGGuaCCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 25305 0.69 0.471381
Target:  5'- cCGGCcagGUGGACGAc-GCCGUGGuGGCCa -3'
miRNA:   3'- aGCUG---CAUCUGCUccCGGUACC-UCGG- -5'
11424 3' -56.4 NC_003085.1 + 16682 0.69 0.46143
Target:  5'- gUCGACcUgcuacacgcaGGGCGGGGGCU-UGGGGCUu -3'
miRNA:   3'- -AGCUGcA----------UCUGCUCCCGGuACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 5615 0.69 0.451592
Target:  5'- gUGACGcggUGGugGAcGGGCUGcUGGAGCg -3'
miRNA:   3'- aGCUGC---AUCugCU-CCCGGU-ACCUCGg -5'
11424 3' -56.4 NC_003085.1 + 36951 0.74 0.230194
Target:  5'- cUCGAC--AGGC-AGGGCCGcGGGGCCa -3'
miRNA:   3'- -AGCUGcaUCUGcUCCCGGUaCCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 42728 0.73 0.255174
Target:  5'- -aGGCGUGGGCGucGGGGCgAUGcGGGCg -3'
miRNA:   3'- agCUGCAUCUGC--UCCCGgUAC-CUCGg -5'
11424 3' -56.4 NC_003085.1 + 24354 0.71 0.334471
Target:  5'- aCGGCGacgGGACGGccuuuggcggccGGGCCAUcaauggccuggacGGGGCCg -3'
miRNA:   3'- aGCUGCa--UCUGCU------------CCCGGUA-------------CCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 7528 0.71 0.335276
Target:  5'- cCGACGaGGACGcgcGGGCCGaGGGGUg -3'
miRNA:   3'- aGCUGCaUCUGCu--CCCGGUaCCUCGg -5'
11424 3' -56.4 NC_003085.1 + 21492 0.71 0.377328
Target:  5'- gCGGCGUGGugGAcuGGuuccCCuUGGAGCCc -3'
miRNA:   3'- aGCUGCAUCugCU--CCc---GGuACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 35719 0.7 0.404209
Target:  5'- uUUGGCGgccacGGCGAGGGCag-GGuGGCCg -3'
miRNA:   3'- -AGCUGCau---CUGCUCCCGguaCC-UCGG- -5'
11424 3' -56.4 NC_003085.1 + 13575 0.7 0.422788
Target:  5'- gCGcGCGUGGACGuGGGCaccGGAGgCg -3'
miRNA:   3'- aGC-UGCAUCUGCuCCCGguaCCUCgG- -5'
11424 3' -56.4 NC_003085.1 + 14691 0.69 0.44187
Target:  5'- gUGGCGcUGGACGAaGGCCAaGGccgaaGGCCa -3'
miRNA:   3'- aGCUGC-AUCUGCUcCCGGUaCC-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.