miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 3' -56.4 NC_003085.1 + 104 0.66 0.652152
Target:  5'- aCGGCGgacGGGCGGcGGGCCcccaauGUGGGGa- -3'
miRNA:   3'- aGCUGCa--UCUGCU-CCCGG------UACCUCgg -5'
11424 3' -56.4 NC_003085.1 + 492 0.78 0.120409
Target:  5'- -gGGCG-AGGCuGAGGGCCugcguuUGGAGCCg -3'
miRNA:   3'- agCUGCaUCUG-CUCCCGGu-----ACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 1383 0.67 0.565146
Target:  5'- cCGACGUcugGGACGAGGuG-UAUGaGAGCg -3'
miRNA:   3'- aGCUGCA---UCUGCUCC-CgGUAC-CUCGg -5'
11424 3' -56.4 NC_003085.1 + 3168 0.75 0.196622
Target:  5'- aUGACGUGGAgGAGGGCUgacAUGG-GCa -3'
miRNA:   3'- aGCUGCAUCUgCUCCCGG---UACCuCGg -5'
11424 3' -56.4 NC_003085.1 + 5495 0.7 0.386154
Target:  5'- gCGGCGUGGGgccGGGCCGUgagGGAGCa -3'
miRNA:   3'- aGCUGCAUCUgcuCCCGGUA---CCUCGg -5'
11424 3' -56.4 NC_003085.1 + 5615 0.69 0.451592
Target:  5'- gUGACGcggUGGugGAcGGGCUGcUGGAGCg -3'
miRNA:   3'- aGCUGC---AUCugCU-CCCGGU-ACCUCGg -5'
11424 3' -56.4 NC_003085.1 + 7528 0.71 0.335276
Target:  5'- cCGACGaGGACGcgcGGGCCGaGGGGUg -3'
miRNA:   3'- aGCUGCaUCUGCu--CCCGGUaCCUCGg -5'
11424 3' -56.4 NC_003085.1 + 8150 0.66 0.64124
Target:  5'- uUCGGCGUgucgguGGGCGuGaGGUCGUcgaaGAGCCg -3'
miRNA:   3'- -AGCUGCA------UCUGCuC-CCGGUAc---CUCGG- -5'
11424 3' -56.4 NC_003085.1 + 9433 0.71 0.366059
Target:  5'- gUCGACGUAGucCGGcccguacgggaagcGGGCCGUGGucgacGCUg -3'
miRNA:   3'- -AGCUGCAUCu-GCU--------------CCCGGUACCu----CGG- -5'
11424 3' -56.4 NC_003085.1 + 11733 0.67 0.597604
Target:  5'- cUCGACGUGGugcuguCGAGGGgCAUGacacGCg -3'
miRNA:   3'- -AGCUGCAUCu-----GCUCCCgGUACcu--CGg -5'
11424 3' -56.4 NC_003085.1 + 13172 0.7 0.422788
Target:  5'- gUCGAUG-AGGCGGGaGaGCCGUGGuuuGUCg -3'
miRNA:   3'- -AGCUGCaUCUGCUC-C-CGGUACCu--CGG- -5'
11424 3' -56.4 NC_003085.1 + 13575 0.7 0.422788
Target:  5'- gCGcGCGUGGACGuGGGCaccGGAGgCg -3'
miRNA:   3'- aGC-UGCAUCUGCuCCCGguaCCUCgG- -5'
11424 3' -56.4 NC_003085.1 + 14691 0.69 0.44187
Target:  5'- gUGGCGcUGGACGAaGGCCAaGGccgaaGGCCa -3'
miRNA:   3'- aGCUGC-AUCUGCUcCCGGUaCC-----UCGG- -5'
11424 3' -56.4 NC_003085.1 + 16306 0.66 0.630319
Target:  5'- -aGGCGccauGACGGGauGGCCcgGGAGUUg -3'
miRNA:   3'- agCUGCau--CUGCUC--CCGGuaCCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 16682 0.69 0.46143
Target:  5'- gUCGACcUgcuacacgcaGGGCGGGGGCU-UGGGGCUu -3'
miRNA:   3'- -AGCUGcA----------UCUGCUCCCGGuACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 17185 0.67 0.575923
Target:  5'- cUGACGggAGACGAgucccGGGCCAccGAGgCCu -3'
miRNA:   3'- aGCUGCa-UCUGCU-----CCCGGUacCUC-GG- -5'
11424 3' -56.4 NC_003085.1 + 18116 0.68 0.533167
Target:  5'- gUCGGCGcGGGCGGGacGGCCGgccugGGAcGUCu -3'
miRNA:   3'- -AGCUGCaUCUGCUC--CCGGUa----CCU-CGG- -5'
11424 3' -56.4 NC_003085.1 + 18353 0.66 0.630319
Target:  5'- --uACG-GGGCGGugcaGGCCGUGGAGUCg -3'
miRNA:   3'- agcUGCaUCUGCUc---CCGGUACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 18865 0.66 0.663047
Target:  5'- uUCGGCca--GCGAaGGCUgAUGGAGCCg -3'
miRNA:   3'- -AGCUGcaucUGCUcCCGG-UACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 19316 0.71 0.343406
Target:  5'- gUGACGUccuGCGuGGGCUGcUGGGGCCg -3'
miRNA:   3'- aGCUGCAuc-UGCuCCCGGU-ACCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.