miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 3' -56.4 NC_003085.1 + 48655 0.67 0.575923
Target:  5'- gCGGCGgcacgcGGACGuccaccGuGGCC-UGGGGCCa -3'
miRNA:   3'- aGCUGCa-----UCUGCu-----C-CCGGuACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 48207 0.67 0.565146
Target:  5'- gUCGugcGCGaAGACGAGGGUgAUGuacGCCa -3'
miRNA:   3'- -AGC---UGCaUCUGCUCCCGgUACcu-CGG- -5'
11424 3' -56.4 NC_003085.1 + 47316 0.66 0.623767
Target:  5'- -gGACGUcaugAGGCGGGGGCCGccguccucGGAcguguacuugugggcGCCg -3'
miRNA:   3'- agCUGCA----UCUGCUCCCGGUa-------CCU---------------CGG- -5'
11424 3' -56.4 NC_003085.1 + 47148 0.67 0.565146
Target:  5'- gCGGCGgccgguGGCGAGGcaggccagcGCCGUgcugccGGAGCCc -3'
miRNA:   3'- aGCUGCau----CUGCUCC---------CGGUA------CCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 43762 0.67 0.575923
Target:  5'- -gGugGUGGGCGcGGGCU-UGGAcucaacaccgGCCa -3'
miRNA:   3'- agCugCAUCUGCuCCCGGuACCU----------CGG- -5'
11424 3' -56.4 NC_003085.1 + 43376 0.65 0.670657
Target:  5'- gCGACGgaGGACucccuGGGGCCgcuggugcaucccgGUGGGGCUc -3'
miRNA:   3'- aGCUGCa-UCUGc----UCCCGG--------------UACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 42728 0.73 0.255174
Target:  5'- -aGGCGUGGGCGucGGGGCgAUGcGGGCg -3'
miRNA:   3'- agCUGCAUCUGC--UCCCGgUAC-CUCGg -5'
11424 3' -56.4 NC_003085.1 + 42368 0.67 0.554424
Target:  5'- cCGGCc--GGCGAGGauggcgcucaCCAUGGGGCCa -3'
miRNA:   3'- aGCUGcauCUGCUCCc---------GGUACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 42015 0.66 0.661959
Target:  5'- gCGGCGUcggcacGGACGAGGGCgccuucucuccagCcgGGuAGCa -3'
miRNA:   3'- aGCUGCA------UCUGCUCCCG-------------GuaCC-UCGg -5'
11424 3' -56.4 NC_003085.1 + 41391 0.68 0.491599
Target:  5'- -gGugGUGGGUGAcGGCCGUguugucGGAGCCu -3'
miRNA:   3'- agCugCAUCUGCUcCCGGUA------CCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 40839 0.66 0.6194
Target:  5'- cUGACGgcGGcCGGGcuGGCCAaccUGGAGgCCa -3'
miRNA:   3'- aGCUGCauCU-GCUC--CCGGU---ACCUC-GG- -5'
11424 3' -56.4 NC_003085.1 + 40365 1.13 0.000417
Target:  5'- cUCGACGUAGACGAGGGCCAUGGAGCCg -3'
miRNA:   3'- -AGCUGCAUCUGCUCCCGGUACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 39378 0.7 0.413434
Target:  5'- cCGACGccGGCGGGGGCuCAUGcGgaagcaacccAGCCg -3'
miRNA:   3'- aGCUGCauCUGCUCCCG-GUAC-C----------UCGG- -5'
11424 3' -56.4 NC_003085.1 + 39138 0.68 0.543761
Target:  5'- gCGACGUGG-CGGGGGCCGcaucGcauucguuccacAGCCg -3'
miRNA:   3'- aGCUGCAUCuGCUCCCGGUac--C------------UCGG- -5'
11424 3' -56.4 NC_003085.1 + 36951 0.74 0.230194
Target:  5'- cUCGAC--AGGC-AGGGCCGcGGGGCCa -3'
miRNA:   3'- -AGCUGcaUCUGcUCCCGGUaCCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 36017 0.66 0.663047
Target:  5'- cUUGGCG--GAUGGcGGCCAUGGGcacGCCg -3'
miRNA:   3'- -AGCUGCauCUGCUcCCGGUACCU---CGG- -5'
11424 3' -56.4 NC_003085.1 + 35719 0.7 0.404209
Target:  5'- uUUGGCGgccacGGCGAGGGCag-GGuGGCCg -3'
miRNA:   3'- -AGCUGCau---CUGCUCCCGguaCC-UCGG- -5'
11424 3' -56.4 NC_003085.1 + 35022 0.71 0.351677
Target:  5'- cUCGACGaUAGccguaGAGGGCCAgcccucgcGGAGCa -3'
miRNA:   3'- -AGCUGC-AUCug---CUCCCGGUa-------CCUCGg -5'
11424 3' -56.4 NC_003085.1 + 32129 0.66 0.630319
Target:  5'- -gGugGUGcGACGGGGGCgGcUGGuGGCg -3'
miRNA:   3'- agCugCAU-CUGCUCCCGgU-ACC-UCGg -5'
11424 3' -56.4 NC_003085.1 + 31916 0.67 0.608492
Target:  5'- aCGAagcCGUAGACGAaGGCgcUGcGAGCCc -3'
miRNA:   3'- aGCU---GCAUCUGCUcCCGguAC-CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.