Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11424 | 3' | -56.4 | NC_003085.1 | + | 40365 | 1.13 | 0.000417 |
Target: 5'- cUCGACGUAGACGAGGGCCAUGGAGCCg -3' miRNA: 3'- -AGCUGCAUCUGCUCCCGGUACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 492 | 0.78 | 0.120409 |
Target: 5'- -gGGCG-AGGCuGAGGGCCugcguuUGGAGCCg -3' miRNA: 3'- agCUGCaUCUG-CUCCCGGu-----ACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 3168 | 0.75 | 0.196622 |
Target: 5'- aUGACGUGGAgGAGGGCUgacAUGG-GCa -3' miRNA: 3'- aGCUGCAUCUgCUCCCGG---UACCuCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 36951 | 0.74 | 0.230194 |
Target: 5'- cUCGAC--AGGC-AGGGCCGcGGGGCCa -3' miRNA: 3'- -AGCUGcaUCUGcUCCCGGUaCCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 42728 | 0.73 | 0.255174 |
Target: 5'- -aGGCGUGGGCGucGGGGCgAUGcGGGCg -3' miRNA: 3'- agCUGCAUCUGC--UCCCGgUAC-CUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 24354 | 0.71 | 0.334471 |
Target: 5'- aCGGCGacgGGACGGccuuuggcggccGGGCCAUcaauggccuggacGGGGCCg -3' miRNA: 3'- aGCUGCa--UCUGCU------------CCCGGUA-------------CCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 7528 | 0.71 | 0.335276 |
Target: 5'- cCGACGaGGACGcgcGGGCCGaGGGGUg -3' miRNA: 3'- aGCUGCaUCUGCu--CCCGGUaCCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 19316 | 0.71 | 0.343406 |
Target: 5'- gUGACGUccuGCGuGGGCUGcUGGGGCCg -3' miRNA: 3'- aGCUGCAuc-UGCuCCCGGU-ACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 35022 | 0.71 | 0.351677 |
Target: 5'- cUCGACGaUAGccguaGAGGGCCAgcccucgcGGAGCa -3' miRNA: 3'- -AGCUGC-AUCug---CUCCCGGUa-------CCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25734 | 0.71 | 0.360088 |
Target: 5'- uUCGGCGccacGGugG-GGGCC--GGGGCCg -3' miRNA: 3'- -AGCUGCa---UCugCuCCCGGuaCCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 9433 | 0.71 | 0.366059 |
Target: 5'- gUCGACGUAGucCGGcccguacgggaagcGGGCCGUGGucgacGCUg -3' miRNA: 3'- -AGCUGCAUCu-GCU--------------CCCGGUACCu----CGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 21492 | 0.71 | 0.377328 |
Target: 5'- gCGGCGUGGugGAcuGGuuccCCuUGGAGCCc -3' miRNA: 3'- aGCUGCAUCugCU--CCc---GGuACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 5495 | 0.7 | 0.386154 |
Target: 5'- gCGGCGUGGGgccGGGCCGUgagGGAGCa -3' miRNA: 3'- aGCUGCAUCUgcuCCCGGUA---CCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 35719 | 0.7 | 0.404209 |
Target: 5'- uUUGGCGgccacGGCGAGGGCag-GGuGGCCg -3' miRNA: 3'- -AGCUGCau---CUGCUCCCGguaCC-UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 39378 | 0.7 | 0.413434 |
Target: 5'- cCGACGccGGCGGGGGCuCAUGcGgaagcaacccAGCCg -3' miRNA: 3'- aGCUGCauCUGCUCCCG-GUAC-C----------UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 13172 | 0.7 | 0.422788 |
Target: 5'- gUCGAUG-AGGCGGGaGaGCCGUGGuuuGUCg -3' miRNA: 3'- -AGCUGCaUCUGCUC-C-CGGUACCu--CGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 13575 | 0.7 | 0.422788 |
Target: 5'- gCGcGCGUGGACGuGGGCaccGGAGgCg -3' miRNA: 3'- aGC-UGCAUCUGCuCCCGguaCCUCgG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 29474 | 0.7 | 0.422788 |
Target: 5'- aCGACGgcGGC-AGGGCCGUacuuGGCCa -3' miRNA: 3'- aGCUGCauCUGcUCCCGGUAcc--UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25125 | 0.7 | 0.436094 |
Target: 5'- gUCGcCGUAGAgcgccgcggagauguCGuuGGCCAUGGuGGCCu -3' miRNA: 3'- -AGCuGCAUCU---------------GCucCCGGUACC-UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 14691 | 0.69 | 0.44187 |
Target: 5'- gUGGCGcUGGACGAaGGCCAaGGccgaaGGCCa -3' miRNA: 3'- aGCUGC-AUCUGCUcCCGGUaCC-----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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