Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11424 | 3' | -56.4 | NC_003085.1 | + | 5615 | 0.69 | 0.451592 |
Target: 5'- gUGACGcggUGGugGAcGGGCUGcUGGAGCg -3' miRNA: 3'- aGCUGC---AUCugCU-CCCGGU-ACCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 16682 | 0.69 | 0.46143 |
Target: 5'- gUCGACcUgcuacacgcaGGGCGGGGGCU-UGGGGCUu -3' miRNA: 3'- -AGCUGcA----------UCUGCUCCCGGuACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25305 | 0.69 | 0.471381 |
Target: 5'- cCGGCcagGUGGACGAc-GCCGUGGuGGCCa -3' miRNA: 3'- aGCUG---CAUCUGCUccCGGUACC-UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 41391 | 0.68 | 0.491599 |
Target: 5'- -gGugGUGGGUGAcGGCCGUguugucGGAGCCu -3' miRNA: 3'- agCugCAUCUGCUcCCGGUA------CCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 19672 | 0.68 | 0.49877 |
Target: 5'- aUGGgGUGGACGAgaagcaugccgccaGGGCCAgugcgcacgaggUGGGGCg -3' miRNA: 3'- aGCUgCAUCUGCU--------------CCCGGU------------ACCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 18116 | 0.68 | 0.533167 |
Target: 5'- gUCGGCGcGGGCGGGacGGCCGgccugGGAcGUCu -3' miRNA: 3'- -AGCUGCaUCUGCUC--CCGGUa----CCU-CGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 26637 | 0.68 | 0.542699 |
Target: 5'- cCGACGUGGcaauCGgagucGGGGCCGUcgccuccugggcgGGAGCg -3' miRNA: 3'- aGCUGCAUCu---GC-----UCCCGGUA-------------CCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 39138 | 0.68 | 0.543761 |
Target: 5'- gCGACGUGG-CGGGGGCCGcaucGcauucguuccacAGCCg -3' miRNA: 3'- aGCUGCAUCuGCUCCCGGUac--C------------UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 42368 | 0.67 | 0.554424 |
Target: 5'- cCGGCc--GGCGAGGauggcgcucaCCAUGGGGCCa -3' miRNA: 3'- aGCUGcauCUGCUCCc---------GGUACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 1383 | 0.67 | 0.565146 |
Target: 5'- cCGACGUcugGGACGAGGuG-UAUGaGAGCg -3' miRNA: 3'- aGCUGCA---UCUGCUCC-CgGUAC-CUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 48207 | 0.67 | 0.565146 |
Target: 5'- gUCGugcGCGaAGACGAGGGUgAUGuacGCCa -3' miRNA: 3'- -AGC---UGCaUCUGCUCCCGgUACcu-CGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 47148 | 0.67 | 0.565146 |
Target: 5'- gCGGCGgccgguGGCGAGGcaggccagcGCCGUgcugccGGAGCCc -3' miRNA: 3'- aGCUGCau----CUGCUCC---------CGGUA------CCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 43762 | 0.67 | 0.575923 |
Target: 5'- -gGugGUGGGCGcGGGCU-UGGAcucaacaccgGCCa -3' miRNA: 3'- agCugCAUCUGCuCCCGGuACCU----------CGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 17185 | 0.67 | 0.575923 |
Target: 5'- cUGACGggAGACGAgucccGGGCCAccGAGgCCu -3' miRNA: 3'- aGCUGCa-UCUGCU-----CCCGGUacCUC-GG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 48655 | 0.67 | 0.575923 |
Target: 5'- gCGGCGgcacgcGGACGuccaccGuGGCC-UGGGGCCa -3' miRNA: 3'- aGCUGCa-----UCUGCu-----C-CCGGuACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 11733 | 0.67 | 0.597604 |
Target: 5'- cUCGACGUGGugcuguCGAGGGgCAUGacacGCg -3' miRNA: 3'- -AGCUGCAUCu-----GCUCCCgGUACcu--CGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 21557 | 0.67 | 0.597604 |
Target: 5'- aCGcGCGgcccGCGAGGGCCAUGacGAGUUg -3' miRNA: 3'- aGC-UGCauc-UGCUCCCGGUAC--CUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 31916 | 0.67 | 0.608492 |
Target: 5'- aCGAagcCGUAGACGAaGGCgcUGcGAGCCc -3' miRNA: 3'- aGCU---GCAUCUGCUcCCGguAC-CUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 22783 | 0.66 | 0.6194 |
Target: 5'- cUUGuCGUAGuCGuccuGGcacGCCGUGGAGUCg -3' miRNA: 3'- -AGCuGCAUCuGCu---CC---CGGUACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 40839 | 0.66 | 0.6194 |
Target: 5'- cUGACGgcGGcCGGGcuGGCCAaccUGGAGgCCa -3' miRNA: 3'- aGCUGCauCU-GCUC--CCGGU---ACCUC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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