Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11424 | 3' | -56.4 | NC_003085.1 | + | 19672 | 0.68 | 0.49877 |
Target: 5'- aUGGgGUGGACGAgaagcaugccgccaGGGCCAgugcgcacgaggUGGGGCg -3' miRNA: 3'- aGCUgCAUCUGCU--------------CCCGGU------------ACCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 21020 | 0.66 | 0.659781 |
Target: 5'- uUCGACGcGGACGGcagccgcaaucucuGGGCUuccgucccgaagGUGGgcaAGCCg -3' miRNA: 3'- -AGCUGCaUCUGCU--------------CCCGG------------UACC---UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 21492 | 0.71 | 0.377328 |
Target: 5'- gCGGCGUGGugGAcuGGuuccCCuUGGAGCCc -3' miRNA: 3'- aGCUGCAUCugCU--CCc---GGuACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 21557 | 0.67 | 0.597604 |
Target: 5'- aCGcGCGgcccGCGAGGGCCAUGacGAGUUg -3' miRNA: 3'- aGC-UGCauc-UGCUCCCGGUAC--CUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 22783 | 0.66 | 0.6194 |
Target: 5'- cUUGuCGUAGuCGuccuGGcacGCCGUGGAGUCg -3' miRNA: 3'- -AGCuGCAUCuGCu---CC---CGGUACCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 24354 | 0.71 | 0.334471 |
Target: 5'- aCGGCGacgGGACGGccuuuggcggccGGGCCAUcaauggccuggacGGGGCCg -3' miRNA: 3'- aGCUGCa--UCUGCU------------CCCGGUA-------------CCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25125 | 0.7 | 0.436094 |
Target: 5'- gUCGcCGUAGAgcgccgcggagauguCGuuGGCCAUGGuGGCCu -3' miRNA: 3'- -AGCuGCAUCU---------------GCucCCGGUACC-UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25281 | 0.66 | 0.652152 |
Target: 5'- cUCGGCGcuggAGAUGAcguccugugGGGCCGUcGGuAGCa -3' miRNA: 3'- -AGCUGCa---UCUGCU---------CCCGGUA-CC-UCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25305 | 0.69 | 0.471381 |
Target: 5'- cCGGCcagGUGGACGAc-GCCGUGGuGGCCa -3' miRNA: 3'- aGCUG---CAUCUGCUccCGGUACC-UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 25734 | 0.71 | 0.360088 |
Target: 5'- uUCGGCGccacGGugG-GGGCC--GGGGCCg -3' miRNA: 3'- -AGCUGCa---UCugCuCCCGGuaCCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 26637 | 0.68 | 0.542699 |
Target: 5'- cCGACGUGGcaauCGgagucGGGGCCGUcgccuccugggcgGGAGCg -3' miRNA: 3'- aGCUGCAUCu---GC-----UCCCGGUA-------------CCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 27762 | 0.66 | 0.630319 |
Target: 5'- -gGAUGUccgAGGCGAagcGGGCCAccucguccUGGAGgCg -3' miRNA: 3'- agCUGCA---UCUGCU---CCCGGU--------ACCUCgG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 29474 | 0.7 | 0.422788 |
Target: 5'- aCGACGgcGGC-AGGGCCGUacuuGGCCa -3' miRNA: 3'- aGCUGCauCUGcUCCCGGUAcc--UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 31916 | 0.67 | 0.608492 |
Target: 5'- aCGAagcCGUAGACGAaGGCgcUGcGAGCCc -3' miRNA: 3'- aGCU---GCAUCUGCUcCCGguAC-CUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 32129 | 0.66 | 0.630319 |
Target: 5'- -gGugGUGcGACGGGGGCgGcUGGuGGCg -3' miRNA: 3'- agCugCAU-CUGCUCCCGgU-ACC-UCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 35022 | 0.71 | 0.351677 |
Target: 5'- cUCGACGaUAGccguaGAGGGCCAgcccucgcGGAGCa -3' miRNA: 3'- -AGCUGC-AUCug---CUCCCGGUa-------CCUCGg -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 35719 | 0.7 | 0.404209 |
Target: 5'- uUUGGCGgccacGGCGAGGGCag-GGuGGCCg -3' miRNA: 3'- -AGCUGCau---CUGCUCCCGguaCC-UCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 36017 | 0.66 | 0.663047 |
Target: 5'- cUUGGCG--GAUGGcGGCCAUGGGcacGCCg -3' miRNA: 3'- -AGCUGCauCUGCUcCCGGUACCU---CGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 36951 | 0.74 | 0.230194 |
Target: 5'- cUCGAC--AGGC-AGGGCCGcGGGGCCa -3' miRNA: 3'- -AGCUGcaUCUGcUCCCGGUaCCUCGG- -5' |
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11424 | 3' | -56.4 | NC_003085.1 | + | 39138 | 0.68 | 0.543761 |
Target: 5'- gCGACGUGG-CGGGGGCCGcaucGcauucguuccacAGCCg -3' miRNA: 3'- aGCUGCAUCuGCUCCCGGUac--C------------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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