miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11427 5' -53.8 NC_003085.1 + 39517 1.15 0.000465
Target:  5'- cGGGAGCCCAUUCCCACAACCAUCUCCa -3'
miRNA:   3'- -CCCUCGGGUAAGGGUGUUGGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 26676 0.77 0.218467
Target:  5'- cGGGAGCggCCGUUgCCGCuGCCGUCgCCa -3'
miRNA:   3'- -CCCUCG--GGUAAgGGUGuUGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 23948 0.73 0.390367
Target:  5'- aGGGGGCUCAUgcccuuUCCCAa---UAUCUCCg -3'
miRNA:   3'- -CCCUCGGGUA------AGGGUguugGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 47684 0.72 0.40893
Target:  5'- -cGGGCCaccugUCCCACuccaacGCCGUCUCCc -3'
miRNA:   3'- ccCUCGGgua--AGGGUGu-----UGGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 39147 0.72 0.447655
Target:  5'- cGGGGGCCgCAUcgcauucgUUCCACAGCCGga-CCa -3'
miRNA:   3'- -CCCUCGG-GUA--------AGGGUGUUGGUagaGG- -5'
11427 5' -53.8 NC_003085.1 + 49358 0.72 0.447655
Target:  5'- uGGGGGCCCGccgCCCGuCcGCCGUC-CUg -3'
miRNA:   3'- -CCCUCGGGUaa-GGGU-GuUGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 35952 0.71 0.457652
Target:  5'- cGGAGCUucucgaCGUUCgCCGCuGCCAcgUCUCCg -3'
miRNA:   3'- cCCUCGG------GUAAG-GGUGuUGGU--AGAGG- -5'
11427 5' -53.8 NC_003085.1 + 49019 0.71 0.477994
Target:  5'- cGGGuAGUCC-UUCaCCGCGACCAgcgacUCUUCg -3'
miRNA:   3'- -CCC-UCGGGuAAG-GGUGUUGGU-----AGAGG- -5'
11427 5' -53.8 NC_003085.1 + 7422 0.71 0.488331
Target:  5'- uGGGGCCC--UCCCGgGaagacGCgCGUCUCCa -3'
miRNA:   3'- cCCUCGGGuaAGGGUgU-----UG-GUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 37273 0.71 0.508254
Target:  5'- cGGGAagcgcucgacgucGCCCAccuggaaCCACGGCCA-CUCCa -3'
miRNA:   3'- -CCCU-------------CGGGUaag----GGUGUUGGUaGAGG- -5'
11427 5' -53.8 NC_003085.1 + 39947 0.7 0.530661
Target:  5'- aGGGAGCCgAUgacccgCCgCGCGccGCCAUCgucaCCg -3'
miRNA:   3'- -CCCUCGGgUAa-----GG-GUGU--UGGUAGa---GG- -5'
11427 5' -53.8 NC_003085.1 + 8899 0.7 0.541459
Target:  5'- uGGGGUCCA---CCGCGGCCGUCaCCg -3'
miRNA:   3'- cCCUCGGGUaagGGUGUUGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 44391 0.7 0.563263
Target:  5'- cGGGcuGUUCGUcaUCCCGCGccgcACCAUCUCa -3'
miRNA:   3'- -CCCu-CGGGUA--AGGGUGU----UGGUAGAGg -5'
11427 5' -53.8 NC_003085.1 + 8294 0.69 0.595265
Target:  5'- uGGAGCCCcuugCCCAggUAGCCGUUggaggcaUCCg -3'
miRNA:   3'- cCCUCGGGuaa-GGGU--GUUGGUAG-------AGG- -5'
11427 5' -53.8 NC_003085.1 + 19520 0.69 0.596374
Target:  5'- uGGaGGGCCUGUg-CCAUGGCCAUCUgCu -3'
miRNA:   3'- -CC-CUCGGGUAagGGUGUUGGUAGAgG- -5'
11427 5' -53.8 NC_003085.1 + 42121 0.69 0.596374
Target:  5'- aGGGGCgCGUguagCCCGCGuccucaGCCGcCUCCg -3'
miRNA:   3'- cCCUCGgGUAa---GGGUGU------UGGUaGAGG- -5'
11427 5' -53.8 NC_003085.1 + 13664 0.69 0.617505
Target:  5'- cGGGAGCgCAacCCCAUggacaaggacaccGGCCGUCgcgCCg -3'
miRNA:   3'- -CCCUCGgGUaaGGGUG-------------UUGGUAGa--GG- -5'
11427 5' -53.8 NC_003085.1 + 1115 0.68 0.629764
Target:  5'- -cGAGCCCG-UCCCGauguCCAUCggCCg -3'
miRNA:   3'- ccCUCGGGUaAGGGUguu-GGUAGa-GG- -5'
11427 5' -53.8 NC_003085.1 + 42453 0.68 0.674262
Target:  5'- aGGGAGCgguCCGUgucgaggCCCGUGGCguCAUCUCCg -3'
miRNA:   3'- -CCCUCG---GGUAa------GGGUGUUG--GUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 12301 0.68 0.682002
Target:  5'- aGGAGCUCGUcCCCGuCAccgccagggugcccGCCGUCgCCg -3'
miRNA:   3'- cCCUCGGGUAaGGGU-GU--------------UGGUAGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.