miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11427 5' -53.8 NC_003085.1 + 1115 0.68 0.629764
Target:  5'- -cGAGCCCG-UCCCGauguCCAUCggCCg -3'
miRNA:   3'- ccCUCGGGUaAGGGUguu-GGUAGa-GG- -5'
11427 5' -53.8 NC_003085.1 + 1406 0.68 0.685312
Target:  5'- cGGAGCCCGaaucaucgcggUCaCCACAGCCAagCgcgCCc -3'
miRNA:   3'- cCCUCGGGUa----------AG-GGUGUUGGUa-Ga--GG- -5'
11427 5' -53.8 NC_003085.1 + 7422 0.71 0.488331
Target:  5'- uGGGGCCC--UCCCGgGaagacGCgCGUCUCCa -3'
miRNA:   3'- cCCUCGGGuaAGGGUgU-----UG-GUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 8294 0.69 0.595265
Target:  5'- uGGAGCCCcuugCCCAggUAGCCGUUggaggcaUCCg -3'
miRNA:   3'- cCCUCGGGuaa-GGGU--GUUGGUAG-------AGG- -5'
11427 5' -53.8 NC_003085.1 + 8899 0.7 0.541459
Target:  5'- uGGGGUCCA---CCGCGGCCGUCaCCg -3'
miRNA:   3'- cCCUCGGGUaagGGUGUUGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 11375 0.67 0.707244
Target:  5'- uGGcGGCgCCGgacaCCUGCGcuGCCGUCUCCg -3'
miRNA:   3'- -CCcUCG-GGUaa--GGGUGU--UGGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 12301 0.68 0.682002
Target:  5'- aGGAGCUCGUcCCCGuCAccgccagggugcccGCCGUCgCCg -3'
miRNA:   3'- cCCUCGGGUAaGGGU-GU--------------UGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 13431 0.67 0.739546
Target:  5'- cGGGGGCauaCGgcgugCCCAUGGCCGccaUCCg -3'
miRNA:   3'- -CCCUCGg--GUaa---GGGUGUUGGUag-AGG- -5'
11427 5' -53.8 NC_003085.1 + 13664 0.69 0.617505
Target:  5'- cGGGAGCgCAacCCCAUggacaaggacaccGGCCGUCgcgCCg -3'
miRNA:   3'- -CCCUCGgGUaaGGGUG-------------UUGGUAGa--GG- -5'
11427 5' -53.8 NC_003085.1 + 17829 0.65 0.797899
Target:  5'- cGGGcugGGCUCAggcacgacuucaggcCCCGCGGCCGgugcCUCCu -3'
miRNA:   3'- -CCC---UCGGGUaa-------------GGGUGUUGGUa---GAGG- -5'
11427 5' -53.8 NC_003085.1 + 19520 0.69 0.596374
Target:  5'- uGGaGGGCCUGUg-CCAUGGCCAUCUgCu -3'
miRNA:   3'- -CC-CUCGGGUAagGGUGUUGGUAGAgG- -5'
11427 5' -53.8 NC_003085.1 + 20629 0.67 0.722422
Target:  5'- cGGGugcuugcuuccccauGGCCUAcUCCUugAGCCAgcggcaCUCCu -3'
miRNA:   3'- -CCC---------------UCGGGUaAGGGugUUGGUa-----GAGG- -5'
11427 5' -53.8 NC_003085.1 + 22924 0.67 0.718102
Target:  5'- -cGAGCCUccgGUUCCCACccagugacucGACCGUaCUCg -3'
miRNA:   3'- ccCUCGGG---UAAGGGUG----------UUGGUA-GAGg -5'
11427 5' -53.8 NC_003085.1 + 23948 0.73 0.390367
Target:  5'- aGGGGGCUCAUgcccuuUCCCAa---UAUCUCCg -3'
miRNA:   3'- -CCCUCGGGUA------AGGGUguugGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 24886 0.66 0.770847
Target:  5'- cGGcGCCCAgUUCCAgGGCCGcCUCa -3'
miRNA:   3'- cCCuCGGGUaAGGGUgUUGGUaGAGg -5'
11427 5' -53.8 NC_003085.1 + 26676 0.77 0.218467
Target:  5'- cGGGAGCggCCGUUgCCGCuGCCGUCgCCa -3'
miRNA:   3'- -CCCUCG--GGUAAgGGUGuUGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 29055 0.66 0.770847
Target:  5'- -uGGGCCCAg-CCCugGGgCGUgUCCg -3'
miRNA:   3'- ccCUCGGGUaaGGGugUUgGUAgAGG- -5'
11427 5' -53.8 NC_003085.1 + 31700 0.67 0.69631
Target:  5'- -cGGGCCuCAgcaaucUCUCGC-GCCAUCUCCc -3'
miRNA:   3'- ccCUCGG-GUa-----AGGGUGuUGGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 32238 0.66 0.791001
Target:  5'- cGGGGcGCCgCGUgCUCACcagcggcgcuGACCAacUCUCCa -3'
miRNA:   3'- -CCCU-CGG-GUAaGGGUG----------UUGGU--AGAGG- -5'
11427 5' -53.8 NC_003085.1 + 34028 0.67 0.718102
Target:  5'- aGGGAuaccGCUCGcgUCCCACAGCC-UCa-- -3'
miRNA:   3'- -CCCU----CGGGUa-AGGGUGUUGGuAGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.