miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11427 5' -53.8 NC_003085.1 + 23948 0.73 0.390367
Target:  5'- aGGGGGCUCAUgcccuuUCCCAa---UAUCUCCg -3'
miRNA:   3'- -CCCUCGGGUA------AGGGUguugGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 32238 0.66 0.791001
Target:  5'- cGGGGcGCCgCGUgCUCACcagcggcgcuGACCAacUCUCCa -3'
miRNA:   3'- -CCCU-CGG-GUAaGGGUG----------UUGGU--AGAGG- -5'
11427 5' -53.8 NC_003085.1 + 24886 0.66 0.770847
Target:  5'- cGGcGCCCAgUUCCAgGGCCGcCUCa -3'
miRNA:   3'- cCCuCGGGUaAGGGUgUUGGUaGAGg -5'
11427 5' -53.8 NC_003085.1 + 35978 0.66 0.760544
Target:  5'- aGGGGGCCagg-CCgACGcCCAggaaacgCUCCg -3'
miRNA:   3'- -CCCUCGGguaaGGgUGUuGGUa------GAGG- -5'
11427 5' -53.8 NC_003085.1 + 41919 0.67 0.718102
Target:  5'- cGGGcguguAGCCCGUgCCCACGGCauggCcCCa -3'
miRNA:   3'- -CCC-----UCGGGUAaGGGUGUUGgua-GaGG- -5'
11427 5' -53.8 NC_003085.1 + 49172 0.67 0.707244
Target:  5'- cGGAggccGCCCggUCCUGCcGCCGcugCUCCu -3'
miRNA:   3'- cCCU----CGGGuaAGGGUGuUGGUa--GAGG- -5'
11427 5' -53.8 NC_003085.1 + 40257 0.67 0.69631
Target:  5'- cGGGGCCUAcgUCCCgccccccuACAACCucGUCUgCg -3'
miRNA:   3'- cCCUCGGGUa-AGGG--------UGUUGG--UAGAgG- -5'
11427 5' -53.8 NC_003085.1 + 35082 0.68 0.685312
Target:  5'- cGGGucuGCCCcucaUCCgCGCAGCCAg--CCg -3'
miRNA:   3'- -CCCu--CGGGua--AGG-GUGUUGGUagaGG- -5'
11427 5' -53.8 NC_003085.1 + 42453 0.68 0.674262
Target:  5'- aGGGAGCgguCCGUgucgaggCCCGUGGCguCAUCUCCg -3'
miRNA:   3'- -CCCUCG---GGUAa------GGGUGUUG--GUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 49358 0.72 0.447655
Target:  5'- uGGGGGCCCGccgCCCGuCcGCCGUC-CUg -3'
miRNA:   3'- -CCCUCGGGUaa-GGGU-GuUGGUAGaGG- -5'
11427 5' -53.8 NC_003085.1 + 49019 0.71 0.477994
Target:  5'- cGGGuAGUCC-UUCaCCGCGACCAgcgacUCUUCg -3'
miRNA:   3'- -CCC-UCGGGuAAG-GGUGUUGGU-----AGAGG- -5'
11427 5' -53.8 NC_003085.1 + 7422 0.71 0.488331
Target:  5'- uGGGGCCC--UCCCGgGaagacGCgCGUCUCCa -3'
miRNA:   3'- cCCUCGGGuaAGGGUgU-----UG-GUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 39947 0.7 0.530661
Target:  5'- aGGGAGCCgAUgacccgCCgCGCGccGCCAUCgucaCCg -3'
miRNA:   3'- -CCCUCGGgUAa-----GG-GUGU--UGGUAGa---GG- -5'
11427 5' -53.8 NC_003085.1 + 44391 0.7 0.563263
Target:  5'- cGGGcuGUUCGUcaUCCCGCGccgcACCAUCUCa -3'
miRNA:   3'- -CCCu-CGGGUA--AGGGUGU----UGGUAGAGg -5'
11427 5' -53.8 NC_003085.1 + 1115 0.68 0.629764
Target:  5'- -cGAGCCCG-UCCCGauguCCAUCggCCg -3'
miRNA:   3'- ccCUCGGGUaAGGGUguu-GGUAGa-GG- -5'
11427 5' -53.8 NC_003085.1 + 39517 1.15 0.000465
Target:  5'- cGGGAGCCCAUUCCCACAACCAUCUCCa -3'
miRNA:   3'- -CCCUCGGGUAAGGGUGUUGGUAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 44100 0.66 0.781004
Target:  5'- cGGGAccggacgcGCCgAgUCCCugGuCCuUCUCCg -3'
miRNA:   3'- -CCCU--------CGGgUaAGGGugUuGGuAGAGG- -5'
11427 5' -53.8 NC_003085.1 + 39388 0.66 0.781004
Target:  5'- cGGGGGCUCAUgcggaagcaaCC-CAGCCGUgUCa -3'
miRNA:   3'- -CCCUCGGGUAag--------GGuGUUGGUAgAGg -5'
11427 5' -53.8 NC_003085.1 + 29055 0.66 0.770847
Target:  5'- -uGGGCCCAg-CCCugGGgCGUgUCCg -3'
miRNA:   3'- ccCUCGGGUaaGGGugUUgGUAgAGG- -5'
11427 5' -53.8 NC_003085.1 + 13431 0.67 0.739546
Target:  5'- cGGGGGCauaCGgcgugCCCAUGGCCGccaUCCg -3'
miRNA:   3'- -CCCUCGg--GUaa---GGGUGUUGGUag-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.