miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11428 3' -55.7 NC_003085.1 + 803 0.68 0.518008
Target:  5'- aGGCcACGGUggacGUCCGCgUGCCGccgCAGg -3'
miRNA:   3'- gUCGuUGUCG----CAGGCGaACGGCa--GUC- -5'
11428 3' -55.7 NC_003085.1 + 1069 0.66 0.605531
Target:  5'- aGGCAgacaauGCGGCG-CUGCUcGCCGcgcUCAGg -3'
miRNA:   3'- gUCGU------UGUCGCaGGCGAaCGGC---AGUC- -5'
11428 3' -55.7 NC_003085.1 + 1531 0.66 0.616669
Target:  5'- aGGCGugacucCAGCGUCUGCUgucgcgagGCCGUg-- -3'
miRNA:   3'- gUCGUu-----GUCGCAGGCGAa-------CGGCAguc -5'
11428 3' -55.7 NC_003085.1 + 1583 0.68 0.496856
Target:  5'- gCGGC-GCGGCGUaCGCgUGCCGUguGc -3'
miRNA:   3'- -GUCGuUGUCGCAgGCGaACGGCAguC- -5'
11428 3' -55.7 NC_003085.1 + 3481 0.66 0.616669
Target:  5'- aCGGCGACGucuGCGUCgacuacaaGCUcGCCGUCuGg -3'
miRNA:   3'- -GUCGUUGU---CGCAGg-------CGAaCGGCAGuC- -5'
11428 3' -55.7 NC_003085.1 + 6575 0.75 0.189814
Target:  5'- -cGUGACAGCGccccaUCCGCUUGCCGUg-- -3'
miRNA:   3'- guCGUUGUCGC-----AGGCGAACGGCAguc -5'
11428 3' -55.7 NC_003085.1 + 10418 0.66 0.626706
Target:  5'- gCAGCAgguacgcGCAGCGcucgcccaCGCaUGCCGUCGc -3'
miRNA:   3'- -GUCGU-------UGUCGCag------GCGaACGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 12002 0.66 0.616669
Target:  5'- gCGGCAGCAGCGgccugaCGCUggcgcaccUGCCGg--- -3'
miRNA:   3'- -GUCGUUGUCGCag----GCGA--------ACGGCaguc -5'
11428 3' -55.7 NC_003085.1 + 12377 0.67 0.576705
Target:  5'- gAGCGACuGCGcgccguccaccugcaUCCGCacGUCGUCGGc -3'
miRNA:   3'- gUCGUUGuCGC---------------AGGCGaaCGGCAGUC- -5'
11428 3' -55.7 NC_003085.1 + 15417 0.68 0.53951
Target:  5'- cCGGCAGCGGUGa--GUaUGCCGUCAc -3'
miRNA:   3'- -GUCGUUGUCGCaggCGaACGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 17394 0.66 0.661259
Target:  5'- uCGGCu-CAG-GUCCGCaUUGCUGUCc- -3'
miRNA:   3'- -GUCGuuGUCgCAGGCG-AACGGCAGuc -5'
11428 3' -55.7 NC_003085.1 + 19132 0.71 0.353277
Target:  5'- -cGCGACAGCGUCCGCcaggGCCc---- -3'
miRNA:   3'- guCGUUGUCGCAGGCGaa--CGGcaguc -5'
11428 3' -55.7 NC_003085.1 + 22737 0.73 0.282322
Target:  5'- aCAGCAcCGGCG-CCGC--GCCGUCAc -3'
miRNA:   3'- -GUCGUuGUCGCaGGCGaaCGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 23097 0.7 0.426217
Target:  5'- gAGCAACGGCaUCCGCUgcgUGCgGUUc- -3'
miRNA:   3'- gUCGUUGUCGcAGGCGA---ACGgCAGuc -5'
11428 3' -55.7 NC_003085.1 + 26496 0.66 0.661259
Target:  5'- gGGUGGCAGacugggccggcuCGUCCgGCUUcGCCGUCGc -3'
miRNA:   3'- gUCGUUGUC------------GCAGG-CGAA-CGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 26673 0.71 0.328294
Target:  5'- gGGCGGgAGCGgccguugCCGC-UGCCGUCGc -3'
miRNA:   3'- gUCGUUgUCGCa------GGCGaACGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 26724 0.68 0.528718
Target:  5'- gCGGUGACGGCG-CgGCgccggUGCUGUCAc -3'
miRNA:   3'- -GUCGUUGUCGCaGgCGa----ACGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 27700 0.66 0.627821
Target:  5'- -cGCGucugGGCGUCCGCccGCUGUCGc -3'
miRNA:   3'- guCGUug--UCGCAGGCGaaCGGCAGUc -5'
11428 3' -55.7 NC_003085.1 + 29241 0.66 0.605531
Target:  5'- uGGCGACguaccggaaGGCGUCCGCgucgugGCUGgccCAGu -3'
miRNA:   3'- gUCGUUG---------UCGCAGGCGaa----CGGCa--GUC- -5'
11428 3' -55.7 NC_003085.1 + 30718 0.68 0.486426
Target:  5'- cCAGCGGCGGCuUCgGCaUGCUGcgCAGg -3'
miRNA:   3'- -GUCGUUGUCGcAGgCGaACGGCa-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.