Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11428 | 3' | -55.7 | NC_003085.1 | + | 32449 | 0.67 | 0.550374 |
Target: 5'- -cGCgAGCAGCGcccaUCCGCgcuucucgucGCCGUCGGc -3' miRNA: 3'- guCG-UUGUCGC----AGGCGaa--------CGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 33770 | 0.67 | 0.572295 |
Target: 5'- aGGCuugGGCGUCCGuCUUGcCCGaCAGa -3' miRNA: 3'- gUCGuugUCGCAGGC-GAAC-GGCaGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 34520 | 0.66 | 0.638977 |
Target: 5'- gCGGCGACAGCGUCaGCaacacagcgGCCG-CGa -3' miRNA: 3'- -GUCGUUGUCGCAGgCGaa-------CGGCaGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 34600 | 0.66 | 0.638977 |
Target: 5'- cCGGCAGCA-CGUCCuGCUUcuCCGUCu- -3' miRNA: 3'- -GUCGUUGUcGCAGG-CGAAc-GGCAGuc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 35304 | 0.67 | 0.561306 |
Target: 5'- uCGGCAGCAG-GU-CGCggcgGCUGUCGGu -3' miRNA: 3'- -GUCGUUGUCgCAgGCGaa--CGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 36637 | 0.74 | 0.223142 |
Target: 5'- gCGGcCAACAGCGcaUCCGCccgGaCCGUCAGg -3' miRNA: 3'- -GUC-GUUGUCGC--AGGCGaa-C-GGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 37343 | 0.66 | 0.616669 |
Target: 5'- uCGGCAccgaaggccucgGgGGCGUCCGaCUUGCgcgCGUCAc -3' miRNA: 3'- -GUCGU------------UgUCGCAGGC-GAACG---GCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 37449 | 0.69 | 0.445805 |
Target: 5'- cCGGCAGgugcgcCAGCGUcaggCCGCUgcUGCCG-CAGg -3' miRNA: 3'- -GUCGUU------GUCGCA----GGCGA--ACGGCaGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 38735 | 1.08 | 0.000843 |
Target: 5'- aCAGCAACAGCGUCCGCUUGCCGUCAGc -3' miRNA: 3'- -GUCGUUGUCGCAGGCGAACGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 40314 | 0.68 | 0.486426 |
Target: 5'- -cGCGGCGGCGagcUCCGCcaggUGCCGcuccCAGa -3' miRNA: 3'- guCGUUGUCGC---AGGCGa---ACGGCa---GUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 41426 | 0.66 | 0.638977 |
Target: 5'- gCGGCAACAGCcauaCGCUcuCCGUCGa -3' miRNA: 3'- -GUCGUUGUCGcag-GCGAacGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 42137 | 0.68 | 0.53951 |
Target: 5'- -cGCGuccuCAGCcgccUCCGCgaugGCCGUCGGa -3' miRNA: 3'- guCGUu---GUCGc---AGGCGaa--CGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 43095 | 0.66 | 0.661259 |
Target: 5'- -----cCAGCGUCCGCUgucacaccGCUGUCAc -3' miRNA: 3'- gucguuGUCGCAGGCGAa-------CGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 43542 | 0.68 | 0.514812 |
Target: 5'- aGGCGGC-GCGUCCaGCUUGCgcgagauaggcccgCGUCAc -3' miRNA: 3'- gUCGUUGuCGCAGG-CGAACG--------------GCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 45115 | 0.66 | 0.661259 |
Target: 5'- -cGCGcGCGGCGUagGCaUUGCCGUCGu -3' miRNA: 3'- guCGU-UGUCGCAggCG-AACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 49004 | 0.68 | 0.518008 |
Target: 5'- -uGCAACAGCGccggcuggcccUCCGC--GCCGUguGa -3' miRNA: 3'- guCGUUGUCGC-----------AGGCGaaCGGCAguC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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