Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11428 | 3' | -55.7 | NC_003085.1 | + | 19132 | 0.71 | 0.353277 |
Target: 5'- -cGCGACAGCGUCCGCcaggGCCc---- -3' miRNA: 3'- guCGUUGUCGCAGGCGaa--CGGcaguc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 26673 | 0.71 | 0.328294 |
Target: 5'- gGGCGGgAGCGgccguugCCGC-UGCCGUCGc -3' miRNA: 3'- gUCGUUgUCGCa------GGCGaACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 22737 | 0.73 | 0.282322 |
Target: 5'- aCAGCAcCGGCG-CCGC--GCCGUCAc -3' miRNA: 3'- -GUCGUuGUCGCaGGCGaaCGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 36637 | 0.74 | 0.223142 |
Target: 5'- gCGGcCAACAGCGcaUCCGCccgGaCCGUCAGg -3' miRNA: 3'- -GUC-GUUGUCGC--AGGCGaa-C-GGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 15417 | 0.68 | 0.53951 |
Target: 5'- cCGGCAGCGGUGa--GUaUGCCGUCAc -3' miRNA: 3'- -GUCGUUGUCGCaggCGaACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 42137 | 0.68 | 0.53951 |
Target: 5'- -cGCGuccuCAGCcgccUCCGCgaugGCCGUCGGa -3' miRNA: 3'- guCGUu---GUCGc---AGGCGaa--CGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 43095 | 0.66 | 0.661259 |
Target: 5'- -----cCAGCGUCCGCUgucacaccGCUGUCAc -3' miRNA: 3'- gucguuGUCGCAGGCGAa-------CGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 26496 | 0.66 | 0.661259 |
Target: 5'- gGGUGGCAGacugggccggcuCGUCCgGCUUcGCCGUCGc -3' miRNA: 3'- gUCGUUGUC------------GCAGG-CGAA-CGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 17394 | 0.66 | 0.661259 |
Target: 5'- uCGGCu-CAG-GUCCGCaUUGCUGUCc- -3' miRNA: 3'- -GUCGuuGUCgCAGGCG-AACGGCAGuc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 10418 | 0.66 | 0.626706 |
Target: 5'- gCAGCAgguacgcGCAGCGcucgcccaCGCaUGCCGUCGc -3' miRNA: 3'- -GUCGU-------UGUCGCag------GCGaACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 37343 | 0.66 | 0.616669 |
Target: 5'- uCGGCAccgaaggccucgGgGGCGUCCGaCUUGCgcgCGUCAc -3' miRNA: 3'- -GUCGU------------UgUCGCAGGC-GAACG---GCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 1069 | 0.66 | 0.605531 |
Target: 5'- aGGCAgacaauGCGGCG-CUGCUcGCCGcgcUCAGg -3' miRNA: 3'- gUCGU------UGUCGCaGGCGAaCGGC---AGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 29241 | 0.66 | 0.605531 |
Target: 5'- uGGCGACguaccggaaGGCGUCCGCgucgugGCUGgccCAGu -3' miRNA: 3'- gUCGUUG---------UCGCAGGCGaa----CGGCa--GUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 12377 | 0.67 | 0.576705 |
Target: 5'- gAGCGACuGCGcgccguccaccugcaUCCGCacGUCGUCGGc -3' miRNA: 3'- gUCGUUGuCGC---------------AGGCGaaCGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 32449 | 0.67 | 0.550374 |
Target: 5'- -cGCgAGCAGCGcccaUCCGCgcuucucgucGCCGUCGGc -3' miRNA: 3'- guCG-UUGUCGC----AGGCGaa--------CGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 38735 | 1.08 | 0.000843 |
Target: 5'- aCAGCAACAGCGUCCGCUUGCCGUCAGc -3' miRNA: 3'- -GUCGUUGUCGCAGGCGAACGGCAGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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