Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11428 | 3' | -55.7 | NC_003085.1 | + | 6575 | 0.75 | 0.189814 |
Target: 5'- -cGUGACAGCGccccaUCCGCUUGCCGUg-- -3' miRNA: 3'- guCGUUGUCGC-----AGGCGAACGGCAguc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 45115 | 0.66 | 0.661259 |
Target: 5'- -cGCGcGCGGCGUagGCaUUGCCGUCGu -3' miRNA: 3'- guCGU-UGUCGCAggCG-AACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 41426 | 0.66 | 0.638977 |
Target: 5'- gCGGCAACAGCcauaCGCUcuCCGUCGa -3' miRNA: 3'- -GUCGUUGUCGcag-GCGAacGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 34600 | 0.66 | 0.638977 |
Target: 5'- cCGGCAGCA-CGUCCuGCUUcuCCGUCu- -3' miRNA: 3'- -GUCGUUGUcGCAGG-CGAAc-GGCAGuc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 34520 | 0.66 | 0.638977 |
Target: 5'- gCGGCGACAGCGUCaGCaacacagcgGCCG-CGa -3' miRNA: 3'- -GUCGUUGUCGCAGgCGaa-------CGGCaGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 27700 | 0.66 | 0.627821 |
Target: 5'- -cGCGucugGGCGUCCGCccGCUGUCGc -3' miRNA: 3'- guCGUug--UCGCAGGCGaaCGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 3481 | 0.66 | 0.616669 |
Target: 5'- aCGGCGACGucuGCGUCgacuacaaGCUcGCCGUCuGg -3' miRNA: 3'- -GUCGUUGU---CGCAGg-------CGAaCGGCAGuC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 1531 | 0.66 | 0.616669 |
Target: 5'- aGGCGugacucCAGCGUCUGCUgucgcgagGCCGUg-- -3' miRNA: 3'- gUCGUu-----GUCGCAGGCGAa-------CGGCAguc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 12002 | 0.66 | 0.616669 |
Target: 5'- gCGGCAGCAGCGgccugaCGCUggcgcaccUGCCGg--- -3' miRNA: 3'- -GUCGUUGUCGCag----GCGA--------ACGGCaguc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 1583 | 0.68 | 0.496856 |
Target: 5'- gCGGC-GCGGCGUaCGCgUGCCGUguGc -3' miRNA: 3'- -GUCGuUGUCGCAgGCGaACGGCAguC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 43542 | 0.68 | 0.514812 |
Target: 5'- aGGCGGC-GCGUCCaGCUUGCgcgagauaggcccgCGUCAc -3' miRNA: 3'- gUCGUUGuCGCAGG-CGAACG--------------GCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 803 | 0.68 | 0.518008 |
Target: 5'- aGGCcACGGUggacGUCCGCgUGCCGccgCAGg -3' miRNA: 3'- gUCGuUGUCG----CAGGCGaACGGCa--GUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 26724 | 0.68 | 0.528718 |
Target: 5'- gCGGUGACGGCG-CgGCgccggUGCUGUCAc -3' miRNA: 3'- -GUCGUUGUCGCaGgCGa----ACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 35304 | 0.67 | 0.561306 |
Target: 5'- uCGGCAGCAG-GU-CGCggcgGCUGUCGGu -3' miRNA: 3'- -GUCGUUGUCgCAgGCGaa--CGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 33770 | 0.67 | 0.572295 |
Target: 5'- aGGCuugGGCGUCCGuCUUGcCCGaCAGa -3' miRNA: 3'- gUCGuugUCGCAGGC-GAAC-GGCaGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 38735 | 1.08 | 0.000843 |
Target: 5'- aCAGCAACAGCGUCCGCUUGCCGUCAGc -3' miRNA: 3'- -GUCGUUGUCGCAGGCGAACGGCAGUC- -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 26496 | 0.66 | 0.661259 |
Target: 5'- gGGUGGCAGacugggccggcuCGUCCgGCUUcGCCGUCGc -3' miRNA: 3'- gUCGUUGUC------------GCAGG-CGAA-CGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 17394 | 0.66 | 0.661259 |
Target: 5'- uCGGCu-CAG-GUCCGCaUUGCUGUCc- -3' miRNA: 3'- -GUCGuuGUCgCAGGCG-AACGGCAGuc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 10418 | 0.66 | 0.626706 |
Target: 5'- gCAGCAgguacgcGCAGCGcucgcccaCGCaUGCCGUCGc -3' miRNA: 3'- -GUCGU-------UGUCGCag------GCGaACGGCAGUc -5' |
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11428 | 3' | -55.7 | NC_003085.1 | + | 37343 | 0.66 | 0.616669 |
Target: 5'- uCGGCAccgaaggccucgGgGGCGUCCGaCUUGCgcgCGUCAc -3' miRNA: 3'- -GUCGU------------UgUCGCAGGC-GAACG---GCAGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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