Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11429 | 5' | -52.5 | NC_003085.1 | + | 7633 | 0.7 | 0.583783 |
Target: 5'- gCGGGacUCAUgGGGCgcuugggcggcGCCGACAUGCGCGa -3' miRNA: 3'- -GUUC--AGUAgCUCG-----------UGGUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 6527 | 0.7 | 0.583783 |
Target: 5'- gGAGUCcgCcaaacuGGCACgGACugGCGCAg -3' miRNA: 3'- gUUCAGuaGc-----UCGUGgUUGugCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 17267 | 0.7 | 0.605302 |
Target: 5'- gCAGGgcgCGUUGAagcacgcGCGCCAccACugGCGCAg -3' miRNA: 3'- -GUUCa--GUAGCU-------CGUGGU--UGugCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 19518 | 0.69 | 0.617805 |
Target: 5'- aCGAGcUUuUCGAGCAgcCCAGCggACGCGCGc -3' miRNA: 3'- -GUUC-AGuAGCUCGU--GGUUG--UGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 9742 | 0.69 | 0.617805 |
Target: 5'- --cGUCAUgGAGU-CCAGgGCGCGCu -3' miRNA: 3'- guuCAGUAgCUCGuGGUUgUGCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 46908 | 0.69 | 0.651945 |
Target: 5'- aAGGUCGUCaccgcGGCAggcggcacagguUCGGCGCGCGCAg -3' miRNA: 3'- gUUCAGUAGc----UCGU------------GGUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 33241 | 0.69 | 0.659897 |
Target: 5'- uGAGcCGUUGAGC-CCGGCaguauucaguccucGCGCGCGa -3' miRNA: 3'- gUUCaGUAGCUCGuGGUUG--------------UGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 8507 | 0.69 | 0.663301 |
Target: 5'- -cAGUaCGaCGcGCACCAGCGgGCGCAg -3' miRNA: 3'- guUCA-GUaGCuCGUGGUUGUgCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 38511 | 0.68 | 0.674626 |
Target: 5'- cCAGGgCA-CGAGCGCauuCAUGCGCAa -3' miRNA: 3'- -GUUCaGUaGCUCGUGguuGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 37429 | 0.68 | 0.708294 |
Target: 5'- -cAGUgCGgcuagCGAGCGCCAACccCGCGCc -3' miRNA: 3'- guUCA-GUa----GCUCGUGGUUGu-GCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 2716 | 0.68 | 0.719374 |
Target: 5'- gCGAGgacuUCGGGCGgcuggCAGCGCGCGCGa -3' miRNA: 3'- -GUUCagu-AGCUCGUg----GUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 21315 | 0.68 | 0.730361 |
Target: 5'- aCAAGgaaAUCGAccuCGUCAGCACGCGCAu -3' miRNA: 3'- -GUUCag-UAGCUc--GUGGUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 12456 | 0.68 | 0.730361 |
Target: 5'- aAGGUCAgcgcUgGGGCGCCAGCA-GUGCc -3' miRNA: 3'- gUUCAGU----AgCUCGUGGUUGUgCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 28047 | 0.67 | 0.741243 |
Target: 5'- --uGUCGgagcCGAGCGCCuuCACGCcaguGCAg -3' miRNA: 3'- guuCAGUa---GCUCGUGGuuGUGCG----CGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 12490 | 0.67 | 0.741243 |
Target: 5'- gGAGUCGaagCG-GCGCCAACAUGgcccCGCGg -3' miRNA: 3'- gUUCAGUa--GCuCGUGGUUGUGC----GCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 40927 | 0.67 | 0.74879 |
Target: 5'- gCAAGUCAuggcgucaccgccuUCGccuGCGCCcGCugGUGCGc -3' miRNA: 3'- -GUUCAGU--------------AGCu--CGUGGuUGugCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 31059 | 0.67 | 0.761583 |
Target: 5'- -cAGUCGcuucgccUCGGggugcGCACCcucaGGCACGCGCAg -3' miRNA: 3'- guUCAGU-------AGCU-----CGUGG----UUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 36230 | 0.67 | 0.77313 |
Target: 5'- --cGUCAUCGAGUugCAcguCAuCGcCGCAc -3' miRNA: 3'- guuCAGUAGCUCGugGUu--GU-GC-GCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 44189 | 0.67 | 0.77313 |
Target: 5'- cCAGGgcguccCGUCGcGCACCcacCACGCGCc -3' miRNA: 3'- -GUUCa-----GUAGCuCGUGGuu-GUGCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 44030 | 0.67 | 0.782439 |
Target: 5'- -cGGUCAUccaugacCGAGCGCagCGugACGCGCc -3' miRNA: 3'- guUCAGUA-------GCUCGUG--GUugUGCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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