miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 5' -52.5 NC_003085.1 + 46719 0.72 0.464014
Target:  5'- gGAGUCcUUGGGCagcGCCuuCGCGCGCGc -3'
miRNA:   3'- gUUCAGuAGCUCG---UGGuuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 24187 0.71 0.506299
Target:  5'- --cGUCAUCuccAGCGCCGAgUACGCGCu -3'
miRNA:   3'- guuCAGUAGc--UCGUGGUU-GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 38324 0.71 0.528054
Target:  5'- --cGUCGugccuaaagcUCGGGC-CUGGCACGCGCAa -3'
miRNA:   3'- guuCAGU----------AGCUCGuGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 47866 0.7 0.572516
Target:  5'- gAGGUCGagCGAGaCGUCAGCGCGUGCGg -3'
miRNA:   3'- gUUCAGUa-GCUC-GUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 23418 0.7 0.583783
Target:  5'- gCGAGUCAUgcAGCGcuucgcCCAGCAgGCGCAg -3'
miRNA:   3'- -GUUCAGUAgcUCGU------GGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 6527 0.7 0.583783
Target:  5'- gGAGUCcgCcaaacuGGCACgGACugGCGCAg -3'
miRNA:   3'- gUUCAGuaGc-----UCGUGgUUGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 2716 0.68 0.719374
Target:  5'- gCGAGgacuUCGGGCGgcuggCAGCGCGCGCGa -3'
miRNA:   3'- -GUUCagu-AGCUCGUg----GUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 17267 0.7 0.605302
Target:  5'- gCAGGgcgCGUUGAagcacgcGCGCCAccACugGCGCAg -3'
miRNA:   3'- -GUUCa--GUAGCU-------CGUGGU--UGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 7633 0.7 0.583783
Target:  5'- gCGGGacUCAUgGGGCgcuugggcggcGCCGACAUGCGCGa -3'
miRNA:   3'- -GUUC--AGUAgCUCG-----------UGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 45040 0.71 0.539062
Target:  5'- gGAGcacCGUCGGGCACCGgaguagAUGCGCGCc -3'
miRNA:   3'- gUUCa--GUAGCUCGUGGU------UGUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 1696 0.72 0.457829
Target:  5'- aCAAGUCGccugCGAGCGCCuggccgucgaauugcGACgcuACGCGCAc -3'
miRNA:   3'- -GUUCAGUa---GCUCGUGG---------------UUG---UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 157 0.72 0.45373
Target:  5'- gAGGUCGccuccCGGGaCGCCGACGCGaCGCAg -3'
miRNA:   3'- gUUCAGUa----GCUC-GUGGUUGUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 12456 0.68 0.730361
Target:  5'- aAGGUCAgcgcUgGGGCGCCAGCA-GUGCc -3'
miRNA:   3'- gUUCAGU----AgCUCGUGGUUGUgCGCGu -5'
11429 5' -52.5 NC_003085.1 + 12490 0.67 0.741243
Target:  5'- gGAGUCGaagCG-GCGCCAACAUGgcccCGCGg -3'
miRNA:   3'- gUUCAGUa--GCuCGUGGUUGUGC----GCGU- -5'
11429 5' -52.5 NC_003085.1 + 40927 0.67 0.74879
Target:  5'- gCAAGUCAuggcgucaccgccuUCGccuGCGCCcGCugGUGCGc -3'
miRNA:   3'- -GUUCAGU--------------AGCu--CGUGGuUGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 31059 0.67 0.761583
Target:  5'- -cAGUCGcuucgccUCGGggugcGCACCcucaGGCACGCGCAg -3'
miRNA:   3'- guUCAGU-------AGCU-----CGUGG----UUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 36230 0.67 0.77313
Target:  5'- --cGUCAUCGAGUugCAcguCAuCGcCGCAc -3'
miRNA:   3'- guuCAGUAGCUCGugGUu--GU-GC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 44030 0.67 0.782439
Target:  5'- -cGGUCAUccaugacCGAGCGCagCGugACGCGCc -3'
miRNA:   3'- guUCAGUA-------GCUCGUG--GUugUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 21536 0.66 0.793631
Target:  5'- gCAAGUCc-CG-GUACCGGaacCACGCGCGg -3'
miRNA:   3'- -GUUCAGuaGCuCGUGGUU---GUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 38513 1.08 0.001689
Target:  5'- cCAAGUCAUCGAGCACCAACACGCGCAc -3'
miRNA:   3'- -GUUCAGUAGCUCGUGGUUGUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.