miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 5' -52.5 NC_003085.1 + 28047 0.67 0.741243
Target:  5'- --uGUCGgagcCGAGCGCCuuCACGCcaguGCAg -3'
miRNA:   3'- guuCAGUa---GCUCGUGGuuGUGCG----CGU- -5'
11429 5' -52.5 NC_003085.1 + 9742 0.69 0.617805
Target:  5'- --cGUCAUgGAGU-CCAGgGCGCGCu -3'
miRNA:   3'- guuCAGUAgCUCGuGGUUgUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 19518 0.69 0.617805
Target:  5'- aCGAGcUUuUCGAGCAgcCCAGCggACGCGCGc -3'
miRNA:   3'- -GUUC-AGuAGCUCGU--GGUUG--UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46908 0.69 0.651945
Target:  5'- aAGGUCGUCaccgcGGCAggcggcacagguUCGGCGCGCGCAg -3'
miRNA:   3'- gUUCAGUAGc----UCGU------------GGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 33241 0.69 0.659897
Target:  5'- uGAGcCGUUGAGC-CCGGCaguauucaguccucGCGCGCGa -3'
miRNA:   3'- gUUCaGUAGCUCGuGGUUG--------------UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 8507 0.69 0.663301
Target:  5'- -cAGUaCGaCGcGCACCAGCGgGCGCAg -3'
miRNA:   3'- guUCA-GUaGCuCGUGGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 38511 0.68 0.674626
Target:  5'- cCAGGgCA-CGAGCGCauuCAUGCGCAa -3'
miRNA:   3'- -GUUCaGUaGCUCGUGguuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 37429 0.68 0.708294
Target:  5'- -cAGUgCGgcuagCGAGCGCCAACccCGCGCc -3'
miRNA:   3'- guUCA-GUa----GCUCGUGGUUGu-GCGCGu -5'
11429 5' -52.5 NC_003085.1 + 21315 0.68 0.730361
Target:  5'- aCAAGgaaAUCGAccuCGUCAGCACGCGCAu -3'
miRNA:   3'- -GUUCag-UAGCUc--GUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 6527 0.7 0.583783
Target:  5'- gGAGUCcgCcaaacuGGCACgGACugGCGCAg -3'
miRNA:   3'- gUUCAGuaGc-----UCGUGgUUGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 23418 0.7 0.583783
Target:  5'- gCGAGUCAUgcAGCGcuucgcCCAGCAgGCGCAg -3'
miRNA:   3'- -GUUCAGUAgcUCGU------GGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 47866 0.7 0.572516
Target:  5'- gAGGUCGagCGAGaCGUCAGCGCGUGCGg -3'
miRNA:   3'- gUUCAGUa-GCUC-GUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 831 0.76 0.263666
Target:  5'- gCAGGUCGUCGAGCGCgucucuCACGuCGCGc -3'
miRNA:   3'- -GUUCAGUAGCUCGUGguu---GUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 47707 0.76 0.300431
Target:  5'- gCGAGUCGUCGAcugcuGCGCCugcuGACGgGCGCGg -3'
miRNA:   3'- -GUUCAGUAGCU-----CGUGG----UUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 11543 0.75 0.341033
Target:  5'- ---uUCGUCGAGCGCCGGggcCAUGCGCc -3'
miRNA:   3'- guucAGUAGCUCGUGGUU---GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 30895 0.73 0.423647
Target:  5'- aAGGUCAUCcagaAGUACCAACugGCGg- -3'
miRNA:   3'- gUUCAGUAGc---UCGUGGUUGugCGCgu -5'
11429 5' -52.5 NC_003085.1 + 4939 0.72 0.443572
Target:  5'- aGAGUCGUCcggcgggugcuGGGCACC-AC-CGCGCAg -3'
miRNA:   3'- gUUCAGUAG-----------CUCGUGGuUGuGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46719 0.72 0.464014
Target:  5'- gGAGUCcUUGGGCagcGCCuuCGCGCGCGc -3'
miRNA:   3'- gUUCAGuAGCUCG---UGGuuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 24187 0.71 0.506299
Target:  5'- --cGUCAUCuccAGCGCCGAgUACGCGCu -3'
miRNA:   3'- guuCAGUAGc--UCGUGGUU-GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 38324 0.71 0.528054
Target:  5'- --cGUCGugccuaaagcUCGGGC-CUGGCACGCGCAa -3'
miRNA:   3'- guuCAGU----------AGCUCGuGGUUGUGCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.