Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11429 | 5' | -52.5 | NC_003085.1 | + | 9522 | 0.66 | 0.793631 |
Target: 5'- gCGGGUCAUCG-GCucCCugguaguGCACGaCGCGg -3' miRNA: 3'- -GUUCAGUAGCuCGu-GGu------UGUGC-GCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 40015 | 0.74 | 0.376272 |
Target: 5'- uCGAGcUCGUCcauGAGCGCCGGCACGUccGCGu -3' miRNA: 3'- -GUUC-AGUAG---CUCGUGGUUGUGCG--CGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 37435 | 0.75 | 0.32433 |
Target: 5'- gAAGUCG-CGcAGCACCGGCAgGUGCGc -3' miRNA: 3'- gUUCAGUaGC-UCGUGGUUGUgCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 38513 | 1.08 | 0.001689 |
Target: 5'- cCAAGUCAUCGAGCACCAACACGCGCAc -3' miRNA: 3'- -GUUCAGUAGCUCGUGGUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 31059 | 0.67 | 0.761583 |
Target: 5'- -cAGUCGcuucgccUCGGggugcGCACCcucaGGCACGCGCAg -3' miRNA: 3'- guUCAGU-------AGCU-----CGUGG----UUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 40927 | 0.67 | 0.74879 |
Target: 5'- gCAAGUCAuggcgucaccgccuUCGccuGCGCCcGCugGUGCGc -3' miRNA: 3'- -GUUCAGU--------------AGCu--CGUGGuUGugCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 12456 | 0.68 | 0.730361 |
Target: 5'- aAGGUCAgcgcUgGGGCGCCAGCA-GUGCc -3' miRNA: 3'- gUUCAGU----AgCUCGUGGUUGUgCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 2716 | 0.68 | 0.719374 |
Target: 5'- gCGAGgacuUCGGGCGgcuggCAGCGCGCGCGa -3' miRNA: 3'- -GUUCagu-AGCUCGUg----GUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 45040 | 0.71 | 0.539062 |
Target: 5'- gGAGcacCGUCGGGCACCGgaguagAUGCGCGCc -3' miRNA: 3'- gUUCa--GUAGCUCGUGGU------UGUGCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 157 | 0.72 | 0.45373 |
Target: 5'- gAGGUCGccuccCGGGaCGCCGACGCGaCGCAg -3' miRNA: 3'- gUUCAGUa----GCUC-GUGGUUGUGC-GCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 7633 | 0.7 | 0.583783 |
Target: 5'- gCGGGacUCAUgGGGCgcuugggcggcGCCGACAUGCGCGa -3' miRNA: 3'- -GUUC--AGUAgCUCG-----------UGGUUGUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 21536 | 0.66 | 0.793631 |
Target: 5'- gCAAGUCc-CG-GUACCGGaacCACGCGCGg -3' miRNA: 3'- -GUUCAGuaGCuCGUGGUU---GUGCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 46317 | 0.73 | 0.423647 |
Target: 5'- gAAGUCAgCGAGCGCCcACucuucgACGCGCc -3' miRNA: 3'- gUUCAGUaGCUCGUGGuUG------UGCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 44030 | 0.67 | 0.782439 |
Target: 5'- -cGGUCAUccaugacCGAGCGCagCGugACGCGCc -3' miRNA: 3'- guUCAGUA-------GCUCGUG--GUugUGCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 17267 | 0.7 | 0.605302 |
Target: 5'- gCAGGgcgCGUUGAagcacgcGCGCCAccACugGCGCAg -3' miRNA: 3'- -GUUCa--GUAGCU-------CGUGGU--UGugCGCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 12409 | 0.73 | 0.39479 |
Target: 5'- --cGUCGUCG-GCGCCAGCGCG-GUAc -3' miRNA: 3'- guuCAGUAGCuCGUGGUUGUGCgCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 38153 | 0.78 | 0.224467 |
Target: 5'- -cAGUCcUCGuccacaAGCGCCAGCGCGCGCu -3' miRNA: 3'- guUCAGuAGC------UCGUGGUUGUGCGCGu -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 36230 | 0.67 | 0.77313 |
Target: 5'- --cGUCAUCGAGUugCAcguCAuCGcCGCAc -3' miRNA: 3'- guuCAGUAGCUCGugGUu--GU-GC-GCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 12490 | 0.67 | 0.741243 |
Target: 5'- gGAGUCGaagCG-GCGCCAACAUGgcccCGCGg -3' miRNA: 3'- gUUCAGUa--GCuCGUGGUUGUGC----GCGU- -5' |
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11429 | 5' | -52.5 | NC_003085.1 | + | 1696 | 0.72 | 0.457829 |
Target: 5'- aCAAGUCGccugCGAGCGCCuggccgucgaauugcGACgcuACGCGCAc -3' miRNA: 3'- -GUUCAGUa---GCUCGUGG---------------UUG---UGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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