miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 5' -52.5 NC_003085.1 + 157 0.72 0.45373
Target:  5'- gAGGUCGccuccCGGGaCGCCGACGCGaCGCAg -3'
miRNA:   3'- gUUCAGUa----GCUC-GUGGUUGUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 831 0.76 0.263666
Target:  5'- gCAGGUCGUCGAGCGCgucucuCACGuCGCGc -3'
miRNA:   3'- -GUUCAGUAGCUCGUGguu---GUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 1696 0.72 0.457829
Target:  5'- aCAAGUCGccugCGAGCGCCuggccgucgaauugcGACgcuACGCGCAc -3'
miRNA:   3'- -GUUCAGUa---GCUCGUGG---------------UUG---UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 2716 0.68 0.719374
Target:  5'- gCGAGgacuUCGGGCGgcuggCAGCGCGCGCGa -3'
miRNA:   3'- -GUUCagu-AGCUCGUg----GUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 4939 0.72 0.443572
Target:  5'- aGAGUCGUCcggcgggugcuGGGCACC-AC-CGCGCAg -3'
miRNA:   3'- gUUCAGUAG-----------CUCGUGGuUGuGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 6527 0.7 0.583783
Target:  5'- gGAGUCcgCcaaacuGGCACgGACugGCGCAg -3'
miRNA:   3'- gUUCAGuaGc-----UCGUGgUUGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 7494 0.66 0.810494
Target:  5'- aCGGGcguccgCGUCGAGCgguugcaggacaucACCGACgaggACGCGCGg -3'
miRNA:   3'- -GUUCa-----GUAGCUCG--------------UGGUUG----UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 7633 0.7 0.583783
Target:  5'- gCGGGacUCAUgGGGCgcuugggcggcGCCGACAUGCGCGa -3'
miRNA:   3'- -GUUC--AGUAgCUCG-----------UGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 8507 0.69 0.663301
Target:  5'- -cAGUaCGaCGcGCACCAGCGgGCGCAg -3'
miRNA:   3'- guUCA-GUaGCuCGUGGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 9522 0.66 0.793631
Target:  5'- gCGGGUCAUCG-GCucCCugguaguGCACGaCGCGg -3'
miRNA:   3'- -GUUCAGUAGCuCGu-GGu------UGUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 9681 0.8 0.165449
Target:  5'- ----aCGUCGAGCACCGGCugGCGUc -3'
miRNA:   3'- guucaGUAGCUCGUGGUUGugCGCGu -5'
11429 5' -52.5 NC_003085.1 + 9742 0.69 0.617805
Target:  5'- --cGUCAUgGAGU-CCAGgGCGCGCu -3'
miRNA:   3'- guuCAGUAgCUCGuGGUUgUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 11543 0.75 0.341033
Target:  5'- ---uUCGUCGAGCGCCGGggcCAUGCGCc -3'
miRNA:   3'- guucAGUAGCUCGUGGUU---GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 12409 0.73 0.39479
Target:  5'- --cGUCGUCG-GCGCCAGCGCG-GUAc -3'
miRNA:   3'- guuCAGUAGCuCGUGGUUGUGCgCGU- -5'
11429 5' -52.5 NC_003085.1 + 12456 0.68 0.730361
Target:  5'- aAGGUCAgcgcUgGGGCGCCAGCA-GUGCc -3'
miRNA:   3'- gUUCAGU----AgCUCGUGGUUGUgCGCGu -5'
11429 5' -52.5 NC_003085.1 + 12490 0.67 0.741243
Target:  5'- gGAGUCGaagCG-GCGCCAACAUGgcccCGCGg -3'
miRNA:   3'- gUUCAGUa--GCuCGUGGUUGUGC----GCGU- -5'
11429 5' -52.5 NC_003085.1 + 13806 0.66 0.832377
Target:  5'- -cAGUCugcgUGgagguGGCGCCAugACGUGCAg -3'
miRNA:   3'- guUCAGua--GC-----UCGUGGUugUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 17267 0.7 0.605302
Target:  5'- gCAGGgcgCGUUGAagcacgcGCGCCAccACugGCGCAg -3'
miRNA:   3'- -GUUCa--GUAGCU-------CGUGGU--UGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 19518 0.69 0.617805
Target:  5'- aCGAGcUUuUCGAGCAgcCCAGCggACGCGCGc -3'
miRNA:   3'- -GUUC-AGuAGCUCGU--GGUUG--UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 21315 0.68 0.730361
Target:  5'- aCAAGgaaAUCGAccuCGUCAGCACGCGCAu -3'
miRNA:   3'- -GUUCag-UAGCUc--GUGGUUGUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.