miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 5' -52.5 NC_003085.1 + 38513 1.08 0.001689
Target:  5'- cCAAGUCAUCGAGCACCAACACGCGCAc -3'
miRNA:   3'- -GUUCAGUAGCUCGUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 9681 0.8 0.165449
Target:  5'- ----aCGUCGAGCACCGGCugGCGUc -3'
miRNA:   3'- guucaGUAGCUCGUGGUUGugCGCGu -5'
11429 5' -52.5 NC_003085.1 + 38153 0.78 0.224467
Target:  5'- -cAGUCcUCGuccacaAGCGCCAGCGCGCGCu -3'
miRNA:   3'- guUCAGuAGC------UCGUGGUUGUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 831 0.76 0.263666
Target:  5'- gCAGGUCGUCGAGCGCgucucuCACGuCGCGc -3'
miRNA:   3'- -GUUCAGUAGCUCGUGguu---GUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 47707 0.76 0.300431
Target:  5'- gCGAGUCGUCGAcugcuGCGCCugcuGACGgGCGCGg -3'
miRNA:   3'- -GUUCAGUAGCU-----CGUGG----UUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 37435 0.75 0.32433
Target:  5'- gAAGUCG-CGcAGCACCGGCAgGUGCGc -3'
miRNA:   3'- gUUCAGUaGC-UCGUGGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 11543 0.75 0.341033
Target:  5'- ---uUCGUCGAGCGCCGGggcCAUGCGCc -3'
miRNA:   3'- guucAGUAGCUCGUGGUU---GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 40015 0.74 0.376272
Target:  5'- uCGAGcUCGUCcauGAGCGCCGGCACGUccGCGu -3'
miRNA:   3'- -GUUC-AGUAG---CUCGUGGUUGUGCG--CGU- -5'
11429 5' -52.5 NC_003085.1 + 12409 0.73 0.39479
Target:  5'- --cGUCGUCG-GCGCCAGCGCG-GUAc -3'
miRNA:   3'- guuCAGUAGCuCGUGGUUGUGCgCGU- -5'
11429 5' -52.5 NC_003085.1 + 46317 0.73 0.423647
Target:  5'- gAAGUCAgCGAGCGCCcACucuucgACGCGCc -3'
miRNA:   3'- gUUCAGUaGCUCGUGGuUG------UGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 30895 0.73 0.423647
Target:  5'- aAGGUCAUCcagaAGUACCAACugGCGg- -3'
miRNA:   3'- gUUCAGUAGc---UCGUGGUUGugCGCgu -5'
11429 5' -52.5 NC_003085.1 + 4939 0.72 0.443572
Target:  5'- aGAGUCGUCcggcgggugcuGGGCACC-AC-CGCGCAg -3'
miRNA:   3'- gUUCAGUAG-----------CUCGUGGuUGuGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 157 0.72 0.45373
Target:  5'- gAGGUCGccuccCGGGaCGCCGACGCGaCGCAg -3'
miRNA:   3'- gUUCAGUa----GCUC-GUGGUUGUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 1696 0.72 0.457829
Target:  5'- aCAAGUCGccugCGAGCGCCuggccgucgaauugcGACgcuACGCGCAc -3'
miRNA:   3'- -GUUCAGUa---GCUCGUGG---------------UUG---UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46719 0.72 0.464014
Target:  5'- gGAGUCcUUGGGCagcGCCuuCGCGCGCGc -3'
miRNA:   3'- gUUCAGuAGCUCG---UGGuuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 24187 0.71 0.506299
Target:  5'- --cGUCAUCuccAGCGCCGAgUACGCGCu -3'
miRNA:   3'- guuCAGUAGc--UCGUGGUU-GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 38324 0.71 0.528054
Target:  5'- --cGUCGugccuaaagcUCGGGC-CUGGCACGCGCAa -3'
miRNA:   3'- guuCAGU----------AGCUCGuGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 45040 0.71 0.539062
Target:  5'- gGAGcacCGUCGGGCACCGgaguagAUGCGCGCc -3'
miRNA:   3'- gUUCa--GUAGCUCGUGGU------UGUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 47866 0.7 0.572516
Target:  5'- gAGGUCGagCGAGaCGUCAGCGCGUGCGg -3'
miRNA:   3'- gUUCAGUa-GCUC-GUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 6527 0.7 0.583783
Target:  5'- gGAGUCcgCcaaacuGGCACgGACugGCGCAg -3'
miRNA:   3'- gUUCAGuaGc-----UCGUGgUUGugCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.