miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 5' -52.5 NC_003085.1 + 47866 0.7 0.572516
Target:  5'- gAGGUCGagCGAGaCGUCAGCGCGUGCGg -3'
miRNA:   3'- gUUCAGUa-GCUC-GUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 47707 0.76 0.300431
Target:  5'- gCGAGUCGUCGAcugcuGCGCCugcuGACGgGCGCGg -3'
miRNA:   3'- -GUUCAGUAGCU-----CGUGG----UUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46908 0.69 0.651945
Target:  5'- aAGGUCGUCaccgcGGCAggcggcacagguUCGGCGCGCGCAg -3'
miRNA:   3'- gUUCAGUAGc----UCGU------------GGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46719 0.72 0.464014
Target:  5'- gGAGUCcUUGGGCagcGCCuuCGCGCGCGc -3'
miRNA:   3'- gUUCAGuAGCUCG---UGGuuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46317 0.73 0.423647
Target:  5'- gAAGUCAgCGAGCGCCcACucuucgACGCGCc -3'
miRNA:   3'- gUUCAGUaGCUCGUGGuUG------UGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 46279 0.66 0.803617
Target:  5'- uGAGUCGUCGAGUGCC--CAUGUcaGCc -3'
miRNA:   3'- gUUCAGUAGCUCGUGGuuGUGCG--CGu -5'
11429 5' -52.5 NC_003085.1 + 45040 0.71 0.539062
Target:  5'- gGAGcacCGUCGGGCACCGgaguagAUGCGCGCc -3'
miRNA:   3'- gUUCa--GUAGCUCGUGGU------UGUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 44189 0.67 0.77313
Target:  5'- cCAGGgcguccCGUCGcGCACCcacCACGCGCc -3'
miRNA:   3'- -GUUCa-----GUAGCuCGUGGuu-GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 44030 0.67 0.782439
Target:  5'- -cGGUCAUccaugacCGAGCGCagCGugACGCGCc -3'
miRNA:   3'- guUCAGUA-------GCUCGUG--GUugUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 40927 0.67 0.74879
Target:  5'- gCAAGUCAuggcgucaccgccuUCGccuGCGCCcGCugGUGCGc -3'
miRNA:   3'- -GUUCAGU--------------AGCu--CGUGGuUGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 40015 0.74 0.376272
Target:  5'- uCGAGcUCGUCcauGAGCGCCGGCACGUccGCGu -3'
miRNA:   3'- -GUUC-AGUAG---CUCGUGGUUGUGCG--CGU- -5'
11429 5' -52.5 NC_003085.1 + 38513 1.08 0.001689
Target:  5'- cCAAGUCAUCGAGCACCAACACGCGCAc -3'
miRNA:   3'- -GUUCAGUAGCUCGUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 38511 0.68 0.674626
Target:  5'- cCAGGgCA-CGAGCGCauuCAUGCGCAa -3'
miRNA:   3'- -GUUCaGUaGCUCGUGguuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 38324 0.71 0.528054
Target:  5'- --cGUCGugccuaaagcUCGGGC-CUGGCACGCGCAa -3'
miRNA:   3'- guuCAGU----------AGCUCGuGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 38153 0.78 0.224467
Target:  5'- -cAGUCcUCGuccacaAGCGCCAGCGCGCGCu -3'
miRNA:   3'- guUCAGuAGC------UCGUGGUUGUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 37435 0.75 0.32433
Target:  5'- gAAGUCG-CGcAGCACCGGCAgGUGCGc -3'
miRNA:   3'- gUUCAGUaGC-UCGUGGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 37429 0.68 0.708294
Target:  5'- -cAGUgCGgcuagCGAGCGCCAACccCGCGCc -3'
miRNA:   3'- guUCA-GUa----GCUCGUGGUUGu-GCGCGu -5'
11429 5' -52.5 NC_003085.1 + 36230 0.67 0.77313
Target:  5'- --cGUCAUCGAGUugCAcguCAuCGcCGCAc -3'
miRNA:   3'- guuCAGUAGCUCGugGUu--GU-GC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 33241 0.69 0.659897
Target:  5'- uGAGcCGUUGAGC-CCGGCaguauucaguccucGCGCGCGa -3'
miRNA:   3'- gUUCaGUAGCUCGuGGUUG--------------UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 31059 0.67 0.761583
Target:  5'- -cAGUCGcuucgccUCGGggugcGCACCcucaGGCACGCGCAg -3'
miRNA:   3'- guUCAGU-------AGCU-----CGUGG----UUGUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.