miRNA display CGI


Results 41 - 60 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 25615 0.69 0.40016
Target:  5'- aGCGcgaCGAggagGAGACGACGaaggccggGCGCCCCg -3'
miRNA:   3'- gUGUag-GCU----CUCUGCUGCg-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45568 0.69 0.403751
Target:  5'- uCGCAgcaCGAGcagugccaccgcgacAGACGGCGgGCGCgCCg -3'
miRNA:   3'- -GUGUag-GCUC---------------UCUGCUGCgCGCGgGG- -5'
11430 3' -58.4 NC_003085.1 + 46118 0.68 0.409175
Target:  5'- gGCGUCgGGGAGcgucgucuguGCGGCGaccaGCGCCUg -3'
miRNA:   3'- gUGUAGgCUCUC----------UGCUGCg---CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 7454 0.68 0.418315
Target:  5'- cCACAUgCCcc-GGugGGCGuCGCGCCUCa -3'
miRNA:   3'- -GUGUA-GGcucUCugCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 47896 0.68 0.418315
Target:  5'- cCGCG-CCGcacuGcAGGCGACGCGCacgGCCUCg -3'
miRNA:   3'- -GUGUaGGCu---C-UCUGCUGCGCG---CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 1409 0.68 0.422006
Target:  5'- aGCGUCCGgaagacguucgucgaAGAGGCGAUGaagGCuGCUCCg -3'
miRNA:   3'- gUGUAGGC---------------UCUCUGCUGCg--CG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 44154 0.68 0.427578
Target:  5'- uCGCcUUC-AG-GACGGCGCGCGCCUUc -3'
miRNA:   3'- -GUGuAGGcUCuCUGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 21986 0.68 0.431317
Target:  5'- cCACAggCCGAcGAGGUGGCcucccgcacgaaacuGCGCGCCCa -3'
miRNA:   3'- -GUGUa-GGCU-CUCUGCUG---------------CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 35621 0.68 0.446463
Target:  5'- gCACAUCCGGcacuucccuGGGCGGCGUcugcacgucaugGCGCCaCCu -3'
miRNA:   3'- -GUGUAGGCUc--------UCUGCUGCG------------CGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 23350 0.68 0.446463
Target:  5'- gCGCcgCCGGccGcCGAgGCGCaGCCCCa -3'
miRNA:   3'- -GUGuaGGCUcuCuGCUgCGCG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 27049 0.67 0.455111
Target:  5'- --aGUCCGGGGucaccucGAUGGacuCGaCGCGCCCCg -3'
miRNA:   3'- gugUAGGCUCU-------CUGCU---GC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 19521 0.67 0.456077
Target:  5'- aGCuuUUCGAGcAGcccaGCgGACGCGCGCCCg -3'
miRNA:   3'- gUGu-AGGCUC-UC----UG-CUGCGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 37132 0.67 0.456077
Target:  5'- uCACG-CCGGGcacGGCGACgGCGgGCaCCCu -3'
miRNA:   3'- -GUGUaGGCUCu--CUGCUG-CGCgCG-GGG- -5'
11430 3' -58.4 NC_003085.1 + 37363 0.67 0.456077
Target:  5'- gGCGUCCGAcuuGCG-CGCGUcacccGCCCCg -3'
miRNA:   3'- gUGUAGGCUcucUGCuGCGCG-----CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 3566 0.67 0.456077
Target:  5'- gGCggCCGGGcGGCaa-GCGCGCCUCg -3'
miRNA:   3'- gUGuaGGCUCuCUGcugCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 39114 0.67 0.456077
Target:  5'- aGCGUCCGcggugccucccgGGAGGCGACGUggcggGgGCCgCa -3'
miRNA:   3'- gUGUAGGC------------UCUCUGCUGCG-----CgCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 42561 0.67 0.465803
Target:  5'- gCGCGggCGAGGGcUGACGCGaugGCCUCa -3'
miRNA:   3'- -GUGUagGCUCUCuGCUGCGCg--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45329 0.67 0.469723
Target:  5'- uCGC-UCCGuAGAG-CGGCGCuggagucccagcgcgGCGCCCa -3'
miRNA:   3'- -GUGuAGGC-UCUCuGCUGCG---------------CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 42231 0.67 0.475635
Target:  5'- gGCuGUCCGuAGGGGCaGCGCuGCGCCauCCa -3'
miRNA:   3'- gUG-UAGGC-UCUCUGcUGCG-CGCGG--GG- -5'
11430 3' -58.4 NC_003085.1 + 19074 0.67 0.475635
Target:  5'- aGCAggcgCCGGGcccGGACGGaGUGCGCCgCa -3'
miRNA:   3'- gUGUa---GGCUC---UCUGCUgCGCGCGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.