miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 30233 0.7 0.127365
Target:  5'- uGGCCcuGGCGCagGCCUu--GCGCGGCGCCc -3'
miRNA:   3'- -UCGG--CUGUG--CGGGccuCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22105 0.7 0.127365
Target:  5'- aAGCaGGC-CGCCCagcaGAGCcCGGCGCCg -3'
miRNA:   3'- -UCGgCUGuGCGGGc---CUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 33548 0.7 0.127365
Target:  5'- cGCCGucCACGCacgaCGGAccauGCGCGGCGaCa -3'
miRNA:   3'- uCGGCu-GUGCGg---GCCU----CGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 24984 0.7 0.130412
Target:  5'- uGCCgcagaacaucucgGACACGUCCGcGGUGCagaaGGCGCCg -3'
miRNA:   3'- uCGG-------------CUGUGCGGGCcUCGCG----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 47592 0.7 0.134227
Target:  5'- gGGCCGAUgaGCGCaagaCGGAGC-CG-CGCCu -3'
miRNA:   3'- -UCGGCUG--UGCGg---GCCUCGcGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 36845 0.7 0.134227
Target:  5'- uGUCaGAauccaGCGCCCGGGGCGCcacGCGCg -3'
miRNA:   3'- uCGG-CUg----UGCGGGCCUCGCGc--CGCGg -5'
11432 3' -64.9 NC_003085.1 + 42094 0.7 0.136709
Target:  5'- cGUCGGCcucguacuggagcgGCGCCCaGGGGCGCGuGUaGCCc -3'
miRNA:   3'- uCGGCUG--------------UGCGGG-CCUCGCGC-CG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 5219 0.7 0.137785
Target:  5'- gAGCgCGACGCgGCCCGGcAGgaaGCGGCcuCCa -3'
miRNA:   3'- -UCG-GCUGUG-CGGGCC-UCg--CGCCGc-GG- -5'
11432 3' -64.9 NC_003085.1 + 36507 0.7 0.137785
Target:  5'- uGCCGGgGCcuUCCGGA-CGCGGCGCg -3'
miRNA:   3'- uCGGCUgUGc-GGGCCUcGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 12216 0.7 0.145161
Target:  5'- uGGUcugCGACGCcuGCCUuGAGCGCGGCGgCu -3'
miRNA:   3'- -UCG---GCUGUG--CGGGcCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 48850 0.7 0.145161
Target:  5'- cAGCCucgaGCGCGCCCaGGA---CGGCGCCa -3'
miRNA:   3'- -UCGGc---UGUGCGGG-CCUcgcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26536 0.69 0.148983
Target:  5'- cGUCGACGCgGCCuCGGAGgGCuuCGCCc -3'
miRNA:   3'- uCGGCUGUG-CGG-GCCUCgCGccGCGG- -5'
11432 3' -64.9 NC_003085.1 + 4401 0.69 0.148983
Target:  5'- -uCCGGCACGCUgGGcGCGCaucuacuccGGUGCCc -3'
miRNA:   3'- ucGGCUGUGCGGgCCuCGCG---------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17927 0.69 0.148983
Target:  5'- uGCCu--GCGCCC--AGCGCGGCGCUc -3'
miRNA:   3'- uCGGcugUGCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 39595 0.69 0.152896
Target:  5'- aAGCUGgaGCGCGUCgCGGAGCGCaccgagcaGGUgGCCg -3'
miRNA:   3'- -UCGGC--UGUGCGG-GCCUCGCG--------CCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 25273 0.69 0.156094
Target:  5'- cGUCGGCGCGCCCGucuaccucaccGCGaCGGCcgGCCa -3'
miRNA:   3'- uCGGCUGUGCGGGCcu---------CGC-GCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 13791 0.69 0.156902
Target:  5'- aGGCgagCGugACGCCagucugcgUGGAG-GUGGCGCCa -3'
miRNA:   3'- -UCG---GCugUGCGG--------GCCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11587 0.69 0.156902
Target:  5'- cGCCuGGCugGaaCGGGGCaggGCGGCGCg -3'
miRNA:   3'- uCGG-CUGugCggGCCUCG---CGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 21461 0.69 0.156902
Target:  5'- uGGCUGACGuuCGCCgacaagggCGGccuGCGCGGCGUg -3'
miRNA:   3'- -UCGGCUGU--GCGG--------GCCu--CGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 43896 0.69 0.156902
Target:  5'- uAGaCGugGCGCaCCGu--CGCGGCGCCa -3'
miRNA:   3'- -UCgGCugUGCG-GGCcucGCGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.