miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 11103 0.67 0.234404
Target:  5'- cGCCGGCGgcauucgUGCCCaGGAaguuGCGC-GUGCCa -3'
miRNA:   3'- uCGGCUGU-------GCGGG-CCU----CGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 19727 0.66 0.246764
Target:  5'- cGGCgGcCACGUCCuGGGCGaCGaCGCCg -3'
miRNA:   3'- -UCGgCuGUGCGGGcCUCGC-GCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 30615 0.66 0.259033
Target:  5'- uGGCCGaACACGaaCUucAGCGCGGCGUa -3'
miRNA:   3'- -UCGGC-UGUGCg-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 10654 0.66 0.271796
Target:  5'- uGCUcACACGCCUGGcugAGCGaCaGCGCa -3'
miRNA:   3'- uCGGcUGUGCGGGCC---UCGC-GcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 828 0.67 0.218194
Target:  5'- cGGCCuGugGCGCaaGGugaaGGCauaCGGCGCCa -3'
miRNA:   3'- -UCGG-CugUGCGggCC----UCGc--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 27324 0.67 0.229267
Target:  5'- gGGCCacCACcuuuggGUCCGGcuGCuGCGGCGCCg -3'
miRNA:   3'- -UCGGcuGUG------CGGGCCu-CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42524 0.66 0.246764
Target:  5'- aAGUCGACcgcccagcCGCCCGGGaUGCGGUGgaCCa -3'
miRNA:   3'- -UCGGCUGu-------GCGGGCCUcGCGCCGC--GG- -5'
11432 3' -64.9 NC_003085.1 + 9170 0.66 0.271796
Target:  5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3'
miRNA:   3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 9078 0.67 0.229267
Target:  5'- uGCCGGCcaGCGCCaGaGGCGuCaGCGCCg -3'
miRNA:   3'- uCGGCUG--UGCGGgCcUCGC-GcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16338 0.66 0.278365
Target:  5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3'
miRNA:   3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1087 0.66 0.246764
Target:  5'- uGCuCGcCGCGCUCaGGAGCGC-GCGUg -3'
miRNA:   3'- uCG-GCuGUGCGGG-CCUCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 45402 0.67 0.234404
Target:  5'- aGGCgGA-GCGCCgucagcgaaagcaUGGGGCGCGGUGgCg -3'
miRNA:   3'- -UCGgCUgUGCGG-------------GCCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 45345 0.66 0.246764
Target:  5'- cGCUGGa--GUCCc-AGCGCGGCGCCc -3'
miRNA:   3'- uCGGCUgugCGGGccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28181 0.66 0.259033
Target:  5'- gGGCCagGACgaaGUCUGG-GCGCGGCaCCa -3'
miRNA:   3'- -UCGG--CUGug-CGGGCCuCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 14962 0.66 0.264715
Target:  5'- cGCCG-CACgGUCCGuGGUGCccugggaGGCGCCc -3'
miRNA:   3'- uCGGCuGUG-CGGGCcUCGCG-------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45909 0.66 0.265352
Target:  5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3'
miRNA:   3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 33246 0.67 0.21283
Target:  5'- cAGCCGcgaugaggaGCACGgCgaGGAGCGCGGUcacgGCUc -3'
miRNA:   3'- -UCGGC---------UGUGCgGg-CCUCGCGCCG----CGG- -5'
11432 3' -64.9 NC_003085.1 + 36352 0.67 0.218194
Target:  5'- gAGCCcgcgcuCACGCaCCucAGCGCGGCGUg -3'
miRNA:   3'- -UCGGcu----GUGCG-GGccUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 28607 0.67 0.223672
Target:  5'- uGGgCGGCAcCGCagCGGcgAGCuCGGCGCCg -3'
miRNA:   3'- -UCgGCUGU-GCGg-GCC--UCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17215 0.67 0.229267
Target:  5'- uGGUCaGCGcCGCUgGuGAGCacGCGGCGCCc -3'
miRNA:   3'- -UCGGcUGU-GCGGgC-CUCG--CGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.