miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 3' -59.6 NC_003085.1 + 14470 0.66 0.467278
Target:  5'- aGCcucgGCCAGCaGCGUGcGCacgagGUCAUCgGCu -3'
miRNA:   3'- gCG----UGGUCGcCGCAC-CG-----CAGUAGgUG- -5'
11434 3' -59.6 NC_003085.1 + 42720 0.66 0.457469
Target:  5'- gGCACCucaGGCGUgGGCGUCGgggCgAUg -3'
miRNA:   3'- gCGUGGucgCCGCA-CCGCAGUa--GgUG- -5'
11434 3' -59.6 NC_003085.1 + 36630 0.66 0.457469
Target:  5'- gGCAUUGGCGGCcaacaGCG-CAUCCGCc -3'
miRNA:   3'- gCGUGGUCGCCGcac--CGCaGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 48726 0.66 0.451637
Target:  5'- aGCACCucucgccuguccgugAGCGGC---GCGUCAggcgCCACg -3'
miRNA:   3'- gCGUGG---------------UCGCCGcacCGCAGUa---GGUG- -5'
11434 3' -59.6 NC_003085.1 + 8206 0.66 0.447772
Target:  5'- cCGCcaguCCAGCcugccgcGCGUGGCGUUGUagaggCCGCa -3'
miRNA:   3'- -GCGu---GGUCGc------CGCACCGCAGUA-----GGUG- -5'
11434 3' -59.6 NC_003085.1 + 43883 0.66 0.447772
Target:  5'- cCGCACCAG-GGCGUagacguGGCG-CAccgUCGCg -3'
miRNA:   3'- -GCGUGGUCgCCGCA------CCGCaGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 36762 0.66 0.446808
Target:  5'- gGcCGCCGGCcucgccgucGGCGUacuccucGGCGUCAUCaucaGCg -3'
miRNA:   3'- gC-GUGGUCG---------CCGCA-------CCGCAGUAGg---UG- -5'
11434 3' -59.6 NC_003085.1 + 24857 0.66 0.438189
Target:  5'- aGCACCuggAGCGaGU-UGGaguaCGUCGUCCACg -3'
miRNA:   3'- gCGUGG---UCGC-CGcACC----GCAGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 24257 0.66 0.438189
Target:  5'- gGUACCAGCcguacugcucGGCGacguUGGCGcUCAUcgCCACc -3'
miRNA:   3'- gCGUGGUCG----------CCGC----ACCGC-AGUA--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 29425 0.66 0.438189
Target:  5'- gGCGCgGGCGGCGgcaaUGcCGUCcUCCAg -3'
miRNA:   3'- gCGUGgUCGCCGC----ACcGCAGuAGGUg -5'
11434 3' -59.6 NC_003085.1 + 10312 0.66 0.438189
Target:  5'- aCGaCGCCguAGCccuuuGCcagGGCGUCAUCCACu -3'
miRNA:   3'- -GC-GUGG--UCGc----CGca-CCGCAGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 45763 0.66 0.438189
Target:  5'- -cCACCAGCaccGGaCGcGGCGUCAggacucgCCGCg -3'
miRNA:   3'- gcGUGGUCG---CC-GCaCCGCAGUa------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 29120 0.66 0.438189
Target:  5'- cCGCGCUgaGGCGcCGUGGCccagaguUCAUCCAg -3'
miRNA:   3'- -GCGUGG--UCGCcGCACCGc------AGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 31663 0.66 0.428726
Target:  5'- gGCACCggggcgGGCGGUGgauguggGGUGUCAUgaGCg -3'
miRNA:   3'- gCGUGG------UCGCCGCa------CCGCAGUAggUG- -5'
11434 3' -59.6 NC_003085.1 + 17478 0.66 0.428726
Target:  5'- aGCGCCAGCcccaGGCGUaacgggGGCaGUCG-CCAg -3'
miRNA:   3'- gCGUGGUCG----CCGCA------CCG-CAGUaGGUg -5'
11434 3' -59.6 NC_003085.1 + 34828 0.66 0.428726
Target:  5'- gGCGCUgaccgAGC-GCGUcaagaaGGCGUCAUCCGa -3'
miRNA:   3'- gCGUGG-----UCGcCGCA------CCGCAGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 20852 0.66 0.419383
Target:  5'- cCGCAgCAGCGaGCGccacaccaccGGCGU-GUCCACc -3'
miRNA:   3'- -GCGUgGUCGC-CGCa---------CCGCAgUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 11303 0.67 0.410166
Target:  5'- uGCGCC-GCGGCGggGaGCGcCA-CCACc -3'
miRNA:   3'- gCGUGGuCGCCGCa-C-CGCaGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 45408 0.67 0.409251
Target:  5'- aGCGCCGucagcgaaagcauGgGGCGcggUGGCGUCGUCacgGCa -3'
miRNA:   3'- gCGUGGU-------------CgCCGC---ACCGCAGUAGg--UG- -5'
11434 3' -59.6 NC_003085.1 + 6764 0.67 0.401075
Target:  5'- cCGCGCC-GUGGCGgacGGCGagAgcccuUCCGCu -3'
miRNA:   3'- -GCGUGGuCGCCGCa--CCGCagU-----AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.