miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11435 5' -56.4 NC_003085.1 + 9154 0.66 0.634602
Target:  5'- ------gGCGGAGCUCGcCGC-CGCGCa -3'
miRNA:   3'- ucaucagUGUCUCGGGC-GCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 43910 0.66 0.623565
Target:  5'- ---cGUCGCGGcgccaGGCCCuuuGCGCgcacuUCGCGCa -3'
miRNA:   3'- ucauCAGUGUC-----UCGGG---CGCG-----AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 28945 0.66 0.623565
Target:  5'- cGUcaugCGCGGAG-UCGCGCUCGuCGCg -3'
miRNA:   3'- uCAuca-GUGUCUCgGGCGCGAGU-GCG- -5'
11435 5' -56.4 NC_003085.1 + 34836 0.66 0.612536
Target:  5'- uGGgcGUCACAcAGCCCaugaGCUUcgACGCg -3'
miRNA:   3'- -UCauCAGUGUcUCGGGcg--CGAG--UGCG- -5'
11435 5' -56.4 NC_003085.1 + 17917 0.66 0.612536
Target:  5'- cGUAG--ACGGGuGCCUGCGCccaGCGCg -3'
miRNA:   3'- uCAUCagUGUCU-CGGGCGCGag-UGCG- -5'
11435 5' -56.4 NC_003085.1 + 37917 0.66 0.601524
Target:  5'- -uUGG-CGCAG-GCCCcgGCGCUCgacgaACGCg -3'
miRNA:   3'- ucAUCaGUGUCuCGGG--CGCGAG-----UGCG- -5'
11435 5' -56.4 NC_003085.1 + 27850 0.66 0.601524
Target:  5'- cGUcucgCGCGGGucGCUCGCGC-CACGCa -3'
miRNA:   3'- uCAuca-GUGUCU--CGGGCGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 44184 0.66 0.601524
Target:  5'- ---cGUCuucuucGCCCGUGCUCGCGUa -3'
miRNA:   3'- ucauCAGugucu-CGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 24911 0.66 0.601524
Target:  5'- ----aUCGCcGAGUaacaGCGCUCGCGCa -3'
miRNA:   3'- ucaucAGUGuCUCGgg--CGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 11284 0.66 0.590538
Target:  5'- gAGUGGgcccggcuuCGGaAGCgCGCGCUgGCGCu -3'
miRNA:   3'- -UCAUCagu------GUC-UCGgGCGCGAgUGCG- -5'
11435 5' -56.4 NC_003085.1 + 24911 0.67 0.56868
Target:  5'- --aGGUCAgGcauGUCCGCGC-CGCGCa -3'
miRNA:   3'- ucaUCAGUgUcu-CGGGCGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 32233 0.67 0.56868
Target:  5'- --gAG-CACGGGGCgCCGCguGCUCACcaGCg -3'
miRNA:   3'- ucaUCaGUGUCUCG-GGCG--CGAGUG--CG- -5'
11435 5' -56.4 NC_003085.1 + 28036 0.67 0.56868
Target:  5'- cGgcGUCcuccuguCGGAGCCgaGCGCcuUCACGCc -3'
miRNA:   3'- uCauCAGu------GUCUCGGg-CGCG--AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 48133 0.67 0.536301
Target:  5'- cAGcAGUCugGGcugccuccuccAGCgcggcgUCGCGCUCACGCu -3'
miRNA:   3'- -UCaUCAGugUC-----------UCG------GGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 20754 0.67 0.525648
Target:  5'- --aAG-CGCAGGGCCaGCGCgcagcucCGCGCg -3'
miRNA:   3'- ucaUCaGUGUCUCGGgCGCGa------GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 30519 0.68 0.515074
Target:  5'- ---cGUCgGCGGGGCCCuguaggcgaugGCGCUCAUGg -3'
miRNA:   3'- ucauCAG-UGUCUCGGG-----------CGCGAGUGCg -5'
11435 5' -56.4 NC_003085.1 + 27127 0.68 0.473712
Target:  5'- cGUcGUCGCAGAcGCCCacgcagGUGCUCACc- -3'
miRNA:   3'- uCAuCAGUGUCU-CGGG------CGCGAGUGcg -5'
11435 5' -56.4 NC_003085.1 + 46026 0.68 0.463632
Target:  5'- aGGgcauGUCAguGGGCuCUGCGCauccgCGCGCg -3'
miRNA:   3'- -UCau--CAGUguCUCG-GGCGCGa----GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 7044 0.69 0.424482
Target:  5'- gGGUGGgcgauGAGCCCGCGCgaaaggccCAUGCu -3'
miRNA:   3'- -UCAUCaguguCUCGGGCGCGa-------GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 9812 0.7 0.387375
Target:  5'- gAGUGGuUCAggcCAGAGCCCGaguugcuguCGUUCAuCGCg -3'
miRNA:   3'- -UCAUC-AGU---GUCUCGGGC---------GCGAGU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.