miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11436 5' -57.2 NC_003085.1 + 8213 0.66 0.621831
Target:  5'- uCCAGCCUgccgCGCGuGGCGUUguaGAGGc -3'
miRNA:   3'- -GGUCGGGa---GCGCcUCGUAGaggUUCC- -5'
11436 5' -57.2 NC_003085.1 + 43050 0.66 0.612058
Target:  5'- gCGGCCCgcuggggaacggcugCGUGGAGaCAcggCCGAGGa -3'
miRNA:   3'- gGUCGGGa--------------GCGCCUC-GUagaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 30330 0.66 0.610973
Target:  5'- gCgGGCCCUgGCGGAcGC-UgUCgCGGGGc -3'
miRNA:   3'- -GgUCGGGAgCGCCU-CGuAgAG-GUUCC- -5'
11436 5' -57.2 NC_003085.1 + 38383 0.66 0.610973
Target:  5'- gCAGaCuCCUgGCGGuGCAgg-CCGAGGu -3'
miRNA:   3'- gGUC-G-GGAgCGCCuCGUagaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 17853 0.66 0.610973
Target:  5'- -aGGCCC-CGCGGccGGUGcCUCCuGGGg -3'
miRNA:   3'- ggUCGGGaGCGCC--UCGUaGAGGuUCC- -5'
11436 5' -57.2 NC_003085.1 + 20390 0.66 0.609888
Target:  5'- gCAGCCCacagacuUCGCGGA-CAcgCcCCAGGGc -3'
miRNA:   3'- gGUCGGG-------AGCGCCUcGUa-GaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 12409 0.66 0.600133
Target:  5'- cUCGaCCCg-GCGGGGCcgcugcgCUCCGAGGa -3'
miRNA:   3'- -GGUcGGGagCGCCUCGua-----GAGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 534 0.66 0.589319
Target:  5'- gCuGCCCUCGCGGAGauuggCgaacggCgCGAGGc -3'
miRNA:   3'- gGuCGGGAGCGCCUCgua--Ga-----G-GUUCC- -5'
11436 5' -57.2 NC_003085.1 + 25753 0.66 0.589319
Target:  5'- gCCAGUacgaggcauuCCUCGCGG-GCAagUCCGAc- -3'
miRNA:   3'- -GGUCG----------GGAGCGCCuCGUagAGGUUcc -5'
11436 5' -57.2 NC_003085.1 + 19127 0.66 0.589319
Target:  5'- --cGCCC-CGCGacAGCGUCcgCCAGGGc -3'
miRNA:   3'- gguCGGGaGCGCc-UCGUAGa-GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 29059 0.66 0.57854
Target:  5'- cCCAGCCCU---GGGGCGUgUCCGcgaagucuguGGGc -3'
miRNA:   3'- -GGUCGGGAgcgCCUCGUAgAGGU----------UCC- -5'
11436 5' -57.2 NC_003085.1 + 27522 0.66 0.57854
Target:  5'- gCCGGCauggaugacucCCUCGUGGc-CAUCUCCGGcGGc -3'
miRNA:   3'- -GGUCG-----------GGAGCGCCucGUAGAGGUU-CC- -5'
11436 5' -57.2 NC_003085.1 + 42095 0.66 0.567805
Target:  5'- gUCGG-CCUCGUacuGGAGCGgcgC-CCAGGGg -3'
miRNA:   3'- -GGUCgGGAGCG---CCUCGUa--GaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 4777 0.66 0.567805
Target:  5'- uUCGGCUCUCG-GGugcuGGCAUCcgCCAGGa -3'
miRNA:   3'- -GGUCGGGAGCgCC----UCGUAGa-GGUUCc -5'
11436 5' -57.2 NC_003085.1 + 29967 0.67 0.546494
Target:  5'- gCAGCCCUC-CGGcaAGCAgucaUCCAccggauGGGg -3'
miRNA:   3'- gGUCGGGAGcGCC--UCGUag--AGGU------UCC- -5'
11436 5' -57.2 NC_003085.1 + 6909 0.67 0.535934
Target:  5'- gUCAGCCCUCGCcc-GCGcgCUggCCGAGGc -3'
miRNA:   3'- -GGUCGGGAGCGccuCGUa-GA--GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 29288 0.67 0.525445
Target:  5'- aCCGGCUCUCG-GGAGUacGUCUgCAAc- -3'
miRNA:   3'- -GGUCGGGAGCgCCUCG--UAGAgGUUcc -5'
11436 5' -57.2 NC_003085.1 + 19691 0.67 0.524401
Target:  5'- gCGGCCCUggaggcgCGCGGcGGCAUCUgCAc-- -3'
miRNA:   3'- gGUCGGGA-------GCGCC-UCGUAGAgGUucc -5'
11436 5' -57.2 NC_003085.1 + 36908 0.68 0.50471
Target:  5'- cCCAGCCCggccagcggCGCGGguGGCAUC-CCu--- -3'
miRNA:   3'- -GGUCGGGa--------GCGCC--UCGUAGaGGuucc -5'
11436 5' -57.2 NC_003085.1 + 5801 0.68 0.494475
Target:  5'- -uGGCCUUCGuCGGAGCGgugCgcaUCGGGGa -3'
miRNA:   3'- ggUCGGGAGC-GCCUCGUa--Ga--GGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.