Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11438 | 3' | -58.4 | NC_003085.1 | + | 581 | 0.7 | 0.319175 |
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Target: 5'- gCGAGCCcccgccgcagggUGUcucgaCugGCGCCGUCCuggGCGCGc -3' miRNA: 3'- -GCUCGG------------ACA-----GugUGCGGCAGG---UGCGU- -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 39517 | 0.7 | 0.319175 |
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Target: 5'- --cGCCUcGUCGCugGCauCGUCCugGCc -3' miRNA: 3'- gcuCGGA-CAGUGugCG--GCAGGugCGu -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 1018 | 0.7 | 0.311529 |
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Target: 5'- -uGGCCUaugcUCGCGgccuCGCCGUCCAUGCGg -3' miRNA: 3'- gcUCGGAc---AGUGU----GCGGCAGGUGCGU- -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 32890 | 0.7 | 0.289428 |
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Target: 5'- cCGGGUC-GUCGCAgugGCCGggcgCCACGCAg -3' miRNA: 3'- -GCUCGGaCAGUGUg--CGGCa---GGUGCGU- -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 16381 | 0.71 | 0.282339 |
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Target: 5'- uGAGCCUc-CGCGgGCaCGUCCugGCGa -3' miRNA: 3'- gCUCGGAcaGUGUgCG-GCAGGugCGU- -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 42217 | 0.71 | 0.275389 |
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Target: 5'- aGAGCCUGUCccCGgGCUGUCCguaggggcaGCGCu -3' miRNA: 3'- gCUCGGACAGu-GUgCGGCAGG---------UGCGu -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 45845 | 0.71 | 0.268576 |
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Target: 5'- -cAGCCaGUCGCgGCGCaCGUCCAgGCGg -3' miRNA: 3'- gcUCGGaCAGUG-UGCG-GCAGGUgCGU- -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 31450 | 0.72 | 0.236541 |
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Target: 5'- gCGAGCCU--UGgGCGCCaGUCCGCGCu -3' miRNA: 3'- -GCUCGGAcaGUgUGCGG-CAGGUGCGu -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 24864 | 0.74 | 0.177283 |
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Target: 5'- gGAGCgaGUUGgagUACGUCGUCCACGCGu -3' miRNA: 3'- gCUCGgaCAGU---GUGCGGCAGGUGCGU- -5' |
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| 11438 | 3' | -58.4 | NC_003085.1 | + | 33534 | 1.08 | 0.000521 |
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Target: 5'- cCGAGCCUGUCACACGCCGUCCACGCAc -3' miRNA: 3'- -GCUCGGACAGUGUGCGGCAGGUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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