miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 3' -52.2 NC_003085.1 + 48765 0.69 0.673008
Target:  5'- uGCUCAgGCCGCgccCGaGGCcgGACGCg -3'
miRNA:   3'- -CGAGU-CGGUGacaGCgUUGuaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 48095 0.7 0.616384
Target:  5'- uCUCAGCCcgucGCUGUCGU-ACuUGGCGg -3'
miRNA:   3'- cGAGUCGG----UGACAGCGuUGuACUGCg -5'
11439 3' -52.2 NC_003085.1 + 47006 0.67 0.771297
Target:  5'- uGCgUCAGUgGCUGaCGCAuaguCAaGGCGCu -3'
miRNA:   3'- -CG-AGUCGgUGACaGCGUu---GUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 46617 0.66 0.848635
Target:  5'- gGCUCAGCCcuccucgcccgGCUGcCG-GGCA-GACGUg -3'
miRNA:   3'- -CGAGUCGG-----------UGACaGCgUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 45690 0.67 0.791783
Target:  5'- -gUCAGCCGCgaGUCacggaGCAcuGCGUaGACGCc -3'
miRNA:   3'- cgAGUCGGUGa-CAG-----CGU--UGUA-CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 45545 0.68 0.739456
Target:  5'- cGCUCGGCUuccaguucgagGC-GUCGCAGCAcGA-GCa -3'
miRNA:   3'- -CGAGUCGG-----------UGaCAGCGUUGUaCUgCG- -5'
11439 3' -52.2 NC_003085.1 + 45466 0.66 0.830542
Target:  5'- cGCUCAuCCAgUcGUCGUuguccuuCGUGAUGCa -3'
miRNA:   3'- -CGAGUcGGUgA-CAGCGuu-----GUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 44308 0.67 0.781622
Target:  5'- -aUC-GCCGCgaggUGUUGCGACAUGgAUGCc -3'
miRNA:   3'- cgAGuCGGUG----ACAGCGUUGUAC-UGCG- -5'
11439 3' -52.2 NC_003085.1 + 44030 0.71 0.560108
Target:  5'- cGgUCAuCCAUgaccgagCGCAGCGUGACGCg -3'
miRNA:   3'- -CgAGUcGGUGaca----GCGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 43163 0.66 0.821157
Target:  5'- cGCUCGGCCuGCUccaGUCGCucCAccgccGCGCg -3'
miRNA:   3'- -CGAGUCGG-UGA---CAGCGuuGUac---UGCG- -5'
11439 3' -52.2 NC_003085.1 + 42249 0.71 0.582497
Target:  5'- gGCUCGcGCUACUccaGCGGCAgGGCGCg -3'
miRNA:   3'- -CGAGU-CGGUGAcagCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 41357 0.67 0.811562
Target:  5'- -aUCAGCgcccaACU-UCGCGGCGUGAUGUu -3'
miRNA:   3'- cgAGUCGg----UGAcAGCGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 40621 0.67 0.771297
Target:  5'- uGCUgaCGGCCGCUGccguccUCGUcGCccUGACGCu -3'
miRNA:   3'- -CGA--GUCGGUGAC------AGCGuUGu-ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 40360 0.71 0.571276
Target:  5'- gGCa-AGCCGCUGcugccCGCGGCGcUGACGCc -3'
miRNA:   3'- -CGagUCGGUGACa----GCGUUGU-ACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 40324 0.69 0.695451
Target:  5'- aGCUCcgccagguGCCGCUcccagagagGUCGCGACAgcaacucGACGUa -3'
miRNA:   3'- -CGAGu-------CGGUGA---------CAGCGUUGUa------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 39410 0.69 0.684256
Target:  5'- --cCAGCCGuguCaGUCGCGcgcucgaccucGCAUGGCGCa -3'
miRNA:   3'- cgaGUCGGU---GaCAGCGU-----------UGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 38812 0.69 0.650401
Target:  5'- cGCUCAGCCAg-G-CGUgugAGCAgGGCGCa -3'
miRNA:   3'- -CGAGUCGGUgaCaGCG---UUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 38135 0.67 0.771297
Target:  5'- gGCUCGccGCCcuGCUGgCGUugGugGUGGCGCu -3'
miRNA:   3'- -CGAGU--CGG--UGACaGCG--UugUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 35481 0.67 0.811562
Target:  5'- cGCUCGGuCCAaccgaGCAACG-GGCGCu -3'
miRNA:   3'- -CGAGUC-GGUgacagCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 35301 0.67 0.801767
Target:  5'- uGCUCGGCaGCagGUCGCGGCGgcUGuCGg -3'
miRNA:   3'- -CGAGUCGgUGa-CAGCGUUGU--ACuGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.