Results 1 - 20 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 30726 | 0.66 | 0.848635 |
Target: 5'- gGCuUCGGCaUGCUG-CGCAGgAaGGCGCg -3' miRNA: 3'- -CG-AGUCG-GUGACaGCGUUgUaCUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 45545 | 0.68 | 0.739456 |
Target: 5'- cGCUCGGCUuccaguucgagGC-GUCGCAGCAcGA-GCa -3' miRNA: 3'- -CGAGUCGG-----------UGaCAGCGUUGUaCUgCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 35254 | 0.68 | 0.728596 |
Target: 5'- cGCUU-GCgCGCgggcuUGUCGCAGCccgGACGCu -3' miRNA: 3'- -CGAGuCG-GUG-----ACAGCGUUGua-CUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 33385 | 1.14 | 0.000822 |
Target: 5'- cGCUCAGCCACUGUCGCAACAUGACGCc -3' miRNA: 3'- -CGAGUCGGUGACAGCGUUGUACUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 41357 | 0.67 | 0.811562 |
Target: 5'- -aUCAGCgcccaACU-UCGCGGCGUGAUGUu -3' miRNA: 3'- cgAGUCGg----UGAcAGCGUUGUACUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 27246 | 0.67 | 0.811562 |
Target: 5'- uCUCAGCCuggaUG-CGCAGCAgGuCGCc -3' miRNA: 3'- cGAGUCGGug--ACaGCGUUGUaCuGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 26429 | 0.67 | 0.811562 |
Target: 5'- aGCUUcGcCCACUGcUCGCGAaccucugGGCGCc -3' miRNA: 3'- -CGAGuC-GGUGAC-AGCGUUgua----CUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 11487 | 0.67 | 0.811562 |
Target: 5'- ----cGCCGCaGaCGCuGACAUGGCGCa -3' miRNA: 3'- cgaguCGGUGaCaGCG-UUGUACUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 16914 | 0.67 | 0.810591 |
Target: 5'- cGCUCAuGUCGCUGagcuuguUCGCGACGguGCGg -3' miRNA: 3'- -CGAGU-CGGUGAC-------AGCGUUGUacUGCg -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 47006 | 0.67 | 0.771297 |
Target: 5'- uGCgUCAGUgGCUGaCGCAuaguCAaGGCGCu -3' miRNA: 3'- -CG-AGUCGgUGACaGCGUu---GUaCUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 34163 | 0.67 | 0.801767 |
Target: 5'- gGCUCGacGCCcCgggC-CAGCAUGACGCg -3' miRNA: 3'- -CGAGU--CGGuGacaGcGUUGUACUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 3057 | 0.67 | 0.811562 |
Target: 5'- cGC-CAGaCCACUGcgaugucaccgCGCAcaGCGUGACGa -3' miRNA: 3'- -CGaGUC-GGUGACa----------GCGU--UGUACUGCg -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 34254 | 0.66 | 0.839704 |
Target: 5'- cCUCGcCCACUucCGCGGCGcGGCGCu -3' miRNA: 3'- cGAGUcGGUGAcaGCGUUGUaCUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 22541 | 0.67 | 0.801767 |
Target: 5'- --aCAGUCGCUGaca-GGCAUGGCGCu -3' miRNA: 3'- cgaGUCGGUGACagcgUUGUACUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 5143 | 0.66 | 0.830542 |
Target: 5'- cGCcCAGgCAUccaUGUCGCAACAccuCGCg -3' miRNA: 3'- -CGaGUCgGUG---ACAGCGUUGUacuGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 8182 | 0.67 | 0.811562 |
Target: 5'- ---gAGCCGCUGggCGCuguGCAUGGCccGCc -3' miRNA: 3'- cgagUCGGUGACa-GCGu--UGUACUG--CG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 20350 | 0.67 | 0.791783 |
Target: 5'- gGUUCcgcGCCGC-GUCGCcGCugcUGACGCc -3' miRNA: 3'- -CGAGu--CGGUGaCAGCGuUGu--ACUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 24261 | 0.68 | 0.739456 |
Target: 5'- --cCAGCCguACUGcUCgGCGACGUuGGCGCu -3' miRNA: 3'- cgaGUCGG--UGAC-AG-CGUUGUA-CUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 8632 | 0.66 | 0.821157 |
Target: 5'- aGCcCGGCCGCcGUCaGguACAggccggccggGACGCg -3' miRNA: 3'- -CGaGUCGGUGaCAG-CguUGUa---------CUGCG- -5' |
|||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 35481 | 0.67 | 0.811562 |
Target: 5'- cGCUCGGuCCAaccgaGCAACG-GGCGCu -3' miRNA: 3'- -CGAGUC-GGUgacagCGUUGUaCUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home