miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 5' -55 NC_003085.1 + 33421 1.08 0.001097
Target:  5'- cGCACGUCCCAUACCUCGCCCGCAAAUc -3'
miRNA:   3'- -CGUGCAGGGUAUGGAGCGGGCGUUUA- -5'
11439 5' -55 NC_003085.1 + 17551 0.74 0.242768
Target:  5'- uGCuGC-UCCCGUGCCUCGUCCGCc--- -3'
miRNA:   3'- -CG-UGcAGGGUAUGGAGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 31337 0.74 0.249243
Target:  5'- -gACGUCCCAggccgGCCguccCGCCCGCGc-- -3'
miRNA:   3'- cgUGCAGGGUa----UGGa---GCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 19917 0.74 0.25586
Target:  5'- aGCACGUCCU--GCCgcacgaCGCCCGCGc-- -3'
miRNA:   3'- -CGUGCAGGGuaUGGa-----GCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 40303 0.74 0.26262
Target:  5'- gGCAgCGUCgCCcucUACCUCGCCgGCAAGg -3'
miRNA:   3'- -CGU-GCAG-GGu--AUGGAGCGGgCGUUUa -5'
11439 5' -55 NC_003085.1 + 48974 0.73 0.291115
Target:  5'- cGCAgG-CCCucaGCCUCGCCCGUggGc -3'
miRNA:   3'- -CGUgCaGGGua-UGGAGCGGGCGuuUa -5'
11439 5' -55 NC_003085.1 + 40816 0.7 0.448337
Target:  5'- cGCGCGUCCCG-GCCg-GCCUGUAc-- -3'
miRNA:   3'- -CGUGCAGGGUaUGGagCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 20301 0.7 0.468537
Target:  5'- uGCGgGUCCaaccgcgACgUCGCCUGCGAGUa -3'
miRNA:   3'- -CGUgCAGGgua----UGgAGCGGGCGUUUA- -5'
11439 5' -55 NC_003085.1 + 23680 0.69 0.510267
Target:  5'- aGCgGCGUCCCc-ACCUgcacgucggacuUGCCCGCGAGg -3'
miRNA:   3'- -CG-UGCAGGGuaUGGA------------GCGGGCGUUUa -5'
11439 5' -55 NC_003085.1 + 9738 0.69 0.510267
Target:  5'- cGCugGUCCuCAUccACCUUGCgCUGCGc-- -3'
miRNA:   3'- -CGugCAGG-GUA--UGGAGCG-GGCGUuua -5'
11439 5' -55 NC_003085.1 + 40958 0.69 0.510267
Target:  5'- -gGCGUCCCugugGCCccgccagCGCUCGCAAGc -3'
miRNA:   3'- cgUGCAGGGua--UGGa------GCGGGCGUUUa -5'
11439 5' -55 NC_003085.1 + 9140 0.69 0.520945
Target:  5'- gGCACG-CgCCAgcCCUUGCCgGCGAGg -3'
miRNA:   3'- -CGUGCaG-GGUauGGAGCGGgCGUUUa -5'
11439 5' -55 NC_003085.1 + 36109 0.69 0.520945
Target:  5'- cCACcUCUCcUGCCUCGCCCGuCAGu- -3'
miRNA:   3'- cGUGcAGGGuAUGGAGCGGGC-GUUua -5'
11439 5' -55 NC_003085.1 + 30749 0.69 0.520945
Target:  5'- gGCGCGUCCCG--UCUCGUCagGCGGGg -3'
miRNA:   3'- -CGUGCAGGGUauGGAGCGGg-CGUUUa -5'
11439 5' -55 NC_003085.1 + 6905 0.68 0.553468
Target:  5'- uCGCGUCagc--CCUCGCCCGCGc-- -3'
miRNA:   3'- cGUGCAGgguauGGAGCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 25116 0.68 0.553468
Target:  5'- gGC-CGUCCCGUcGCCguagaGCgCCGCGGAg -3'
miRNA:   3'- -CGuGCAGGGUA-UGGag---CG-GGCGUUUa -5'
11439 5' -55 NC_003085.1 + 38259 0.68 0.553468
Target:  5'- uGCACGUCauggCGUGCCUUccuUCCGCAGGUc -3'
miRNA:   3'- -CGUGCAGg---GUAUGGAGc--GGGCGUUUA- -5'
11439 5' -55 NC_003085.1 + 40263 0.68 0.575485
Target:  5'- cUACGUCCCGccccccuacaACCUCGUCUGCGc-- -3'
miRNA:   3'- cGUGCAGGGUa---------UGGAGCGGGCGUuua -5'
11439 5' -55 NC_003085.1 + 34605 0.68 0.586569
Target:  5'- aGCACGUCCUgcuucuccGU-CUUCGUCCGCu--- -3'
miRNA:   3'- -CGUGCAGGG--------UAuGGAGCGGGCGuuua -5'
11439 5' -55 NC_003085.1 + 34323 0.67 0.608848
Target:  5'- aGUGCGUCUCGUGCUcgUCGCaccaCGCGGc- -3'
miRNA:   3'- -CGUGCAGGGUAUGG--AGCGg---GCGUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.