Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 5' | -55 | NC_003085.1 | + | 3245 | 0.67 | 0.620023 |
Target: 5'- gGC-CGgCCCAcACaCUCGCCCGCc--- -3' miRNA: 3'- -CGuGCaGGGUaUG-GAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 6905 | 0.68 | 0.553468 |
Target: 5'- uCGCGUCagc--CCUCGCCCGCGc-- -3' miRNA: 3'- cGUGCAGgguauGGAGCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 9140 | 0.69 | 0.520945 |
Target: 5'- gGCACG-CgCCAgcCCUUGCCgGCGAGg -3' miRNA: 3'- -CGUGCaG-GGUauGGAGCGGgCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 9738 | 0.69 | 0.510267 |
Target: 5'- cGCugGUCCuCAUccACCUUGCgCUGCGc-- -3' miRNA: 3'- -CGugCAGG-GUA--UGGAGCG-GGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 15150 | 0.67 | 0.620023 |
Target: 5'- aGCugGacgCCUcgGUGCCcUGCCCGCGAc- -3' miRNA: 3'- -CGugCa--GGG--UAUGGaGCGGGCGUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 17551 | 0.74 | 0.242768 |
Target: 5'- uGCuGC-UCCCGUGCCUCGUCCGCc--- -3' miRNA: 3'- -CG-UGcAGGGUAUGGAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 19917 | 0.74 | 0.25586 |
Target: 5'- aGCACGUCCU--GCCgcacgaCGCCCGCGc-- -3' miRNA: 3'- -CGUGCAGGGuaUGGa-----GCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 20301 | 0.7 | 0.468537 |
Target: 5'- uGCGgGUCCaaccgcgACgUCGCCUGCGAGUa -3' miRNA: 3'- -CGUgCAGGgua----UGgAGCGGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 21535 | 0.66 | 0.65804 |
Target: 5'- gGCAaGUCCCgGUACCggaaccacgcgcgGCCCGCGAGg -3' miRNA: 3'- -CGUgCAGGG-UAUGGag-----------CGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 23680 | 0.69 | 0.510267 |
Target: 5'- aGCgGCGUCCCc-ACCUgcacgucggacuUGCCCGCGAGg -3' miRNA: 3'- -CG-UGCAGGGuaUGGA------------GCGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 24026 | 0.67 | 0.641278 |
Target: 5'- -aACGUCaccaagaacaacgCCAU-CCUCGCCCGCc--- -3' miRNA: 3'- cgUGCAG-------------GGUAuGGAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 25116 | 0.68 | 0.553468 |
Target: 5'- gGC-CGUCCCGUcGCCguagaGCgCCGCGGAg -3' miRNA: 3'- -CGuGCAGGGUA-UGGag---CG-GGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 25277 | 0.66 | 0.653573 |
Target: 5'- gGCGCG-CCCGUcuACCUCa-CCGCGAc- -3' miRNA: 3'- -CGUGCaGGGUA--UGGAGcgGGCGUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 26025 | 0.67 | 0.631209 |
Target: 5'- -uGCGUCCC-UGCUgCGCCUGCu--- -3' miRNA: 3'- cgUGCAGGGuAUGGaGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 28829 | 0.65 | 0.708929 |
Target: 5'- cCACGUCaUCGU-CCgCGUCCGCGAAg -3' miRNA: 3'- cGUGCAG-GGUAuGGaGCGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 30749 | 0.69 | 0.520945 |
Target: 5'- gGCGCGUCCCG--UCUCGUCagGCGGGg -3' miRNA: 3'- -CGUGCAGGGUauGGAGCGGg-CGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 31337 | 0.74 | 0.249243 |
Target: 5'- -gACGUCCCAggccgGCCguccCGCCCGCGc-- -3' miRNA: 3'- cgUGCAGGGUa----UGGa---GCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 33421 | 1.08 | 0.001097 |
Target: 5'- cGCACGUCCCAUACCUCGCCCGCAAAUc -3' miRNA: 3'- -CGUGCAGGGUAUGGAGCGGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 34323 | 0.67 | 0.608848 |
Target: 5'- aGUGCGUCUCGUGCUcgUCGCaccaCGCGGc- -3' miRNA: 3'- -CGUGCAGGGUAUGG--AGCGg---GCGUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 34605 | 0.68 | 0.586569 |
Target: 5'- aGCACGUCCUgcuucuccGU-CUUCGUCCGCu--- -3' miRNA: 3'- -CGUGCAGGG--------UAuGGAGCGGGCGuuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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