Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 5' | -55 | NC_003085.1 | + | 35897 | 0.66 | 0.66473 |
Target: 5'- cCACGUCCaCGcgcGCCUUGCUCGCc--- -3' miRNA: 3'- cGUGCAGG-GUa--UGGAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 36109 | 0.69 | 0.520945 |
Target: 5'- cCACcUCUCcUGCCUCGCCCGuCAGu- -3' miRNA: 3'- cGUGcAGGGuAUGGAGCGGGC-GUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 38259 | 0.68 | 0.553468 |
Target: 5'- uGCACGUCauggCGUGCCUUccuUCCGCAGGUc -3' miRNA: 3'- -CGUGCAGg---GUAUGGAGc--GGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 39424 | 0.67 | 0.620023 |
Target: 5'- cGCGCG-CUCG-ACCUCGCauggCGCAAAg -3' miRNA: 3'- -CGUGCaGGGUaUGGAGCGg---GCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40263 | 0.68 | 0.575485 |
Target: 5'- cUACGUCCCGccccccuacaACCUCGUCUGCGc-- -3' miRNA: 3'- cGUGCAGGGUa---------UGGAGCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40303 | 0.74 | 0.26262 |
Target: 5'- gGCAgCGUCgCCcucUACCUCGCCgGCAAGg -3' miRNA: 3'- -CGU-GCAG-GGu--AUGGAGCGGgCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40816 | 0.7 | 0.448337 |
Target: 5'- cGCGCGUCCCG-GCCg-GCCUGUAc-- -3' miRNA: 3'- -CGUGCAGGGUaUGGagCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40936 | 0.66 | 0.697967 |
Target: 5'- -gGCGUCaCCGccuucGCCUgCGCCCGCuGGUg -3' miRNA: 3'- cgUGCAG-GGUa----UGGA-GCGGGCGuUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40958 | 0.69 | 0.510267 |
Target: 5'- -gGCGUCCCugugGCCccgccagCGCUCGCAAGc -3' miRNA: 3'- cgUGCAGGGua--UGGa------GCGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 43139 | 0.67 | 0.642396 |
Target: 5'- aGCGCG-CCCAUGCUgcgCGguuCCCGCu--- -3' miRNA: 3'- -CGUGCaGGGUAUGGa--GC---GGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 43717 | 0.66 | 0.663616 |
Target: 5'- uGCGCucaUCCGUaaucagugcgacgACCUCgGCCCGCGAGUa -3' miRNA: 3'- -CGUGca-GGGUA-------------UGGAG-CGGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 44985 | 0.67 | 0.631209 |
Target: 5'- cGCuuCGUCaCCGUGcCCUCGUcgUCGCGGAUg -3' miRNA: 3'- -CGu-GCAG-GGUAU-GGAGCG--GGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 45795 | 0.66 | 0.697967 |
Target: 5'- cGCGcCGUCCCugccuccaACCUCGCCaccaguGCAGc- -3' miRNA: 3'- -CGU-GCAGGGua------UGGAGCGGg-----CGUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 46612 | 0.66 | 0.675856 |
Target: 5'- gGCAUGgcucagCCCu--CCUCGCCCGg---- -3' miRNA: 3'- -CGUGCa-----GGGuauGGAGCGGGCguuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 48974 | 0.73 | 0.291115 |
Target: 5'- cGCAgG-CCCucaGCCUCGCCCGUggGc -3' miRNA: 3'- -CGUgCaGGGua-UGGAGCGGGCGuuUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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