Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 5' | -55 | NC_003085.1 | + | 20301 | 0.7 | 0.468537 |
Target: 5'- uGCGgGUCCaaccgcgACgUCGCCUGCGAGUa -3' miRNA: 3'- -CGUgCAGGgua----UGgAGCGGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 48974 | 0.73 | 0.291115 |
Target: 5'- cGCAgG-CCCucaGCCUCGCCCGUggGc -3' miRNA: 3'- -CGUgCaGGGua-UGGAGCGGGCGuuUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 17551 | 0.74 | 0.242768 |
Target: 5'- uGCuGC-UCCCGUGCCUCGUCCGCc--- -3' miRNA: 3'- -CG-UGcAGGGUAUGGAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 6905 | 0.68 | 0.553468 |
Target: 5'- uCGCGUCagc--CCUCGCCCGCGc-- -3' miRNA: 3'- cGUGCAGgguauGGAGCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 25116 | 0.68 | 0.553468 |
Target: 5'- gGC-CGUCCCGUcGCCguagaGCgCCGCGGAg -3' miRNA: 3'- -CGuGCAGGGUA-UGGag---CG-GGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 28829 | 0.65 | 0.708929 |
Target: 5'- cCACGUCaUCGU-CCgCGUCCGCGAAg -3' miRNA: 3'- cGUGCAG-GGUAuGGaGCGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40936 | 0.66 | 0.697967 |
Target: 5'- -gGCGUCaCCGccuucGCCUgCGCCCGCuGGUg -3' miRNA: 3'- cgUGCAG-GGUa----UGGA-GCGGGCGuUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 35897 | 0.66 | 0.66473 |
Target: 5'- cCACGUCCaCGcgcGCCUUGCUCGCc--- -3' miRNA: 3'- cGUGCAGG-GUa--UGGAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 43717 | 0.66 | 0.663616 |
Target: 5'- uGCGCucaUCCGUaaucagugcgacgACCUCgGCCCGCGAGUa -3' miRNA: 3'- -CGUGca-GGGUA-------------UGGAG-CGGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 21535 | 0.66 | 0.65804 |
Target: 5'- gGCAaGUCCCgGUACCggaaccacgcgcgGCCCGCGAGg -3' miRNA: 3'- -CGUgCAGGG-UAUGGag-----------CGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 26025 | 0.67 | 0.631209 |
Target: 5'- -uGCGUCCC-UGCUgCGCCUGCu--- -3' miRNA: 3'- cgUGCAGGGuAUGGaGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 39424 | 0.67 | 0.620023 |
Target: 5'- cGCGCG-CUCG-ACCUCGCauggCGCAAAg -3' miRNA: 3'- -CGUGCaGGGUaUGGAGCGg---GCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 15150 | 0.67 | 0.620023 |
Target: 5'- aGCugGacgCCUcgGUGCCcUGCCCGCGAc- -3' miRNA: 3'- -CGugCa--GGG--UAUGGaGCGGGCGUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 34323 | 0.67 | 0.608848 |
Target: 5'- aGUGCGUCUCGUGCUcgUCGCaccaCGCGGc- -3' miRNA: 3'- -CGUGCAGGGUAUGG--AGCGg---GCGUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 33421 | 1.08 | 0.001097 |
Target: 5'- cGCACGUCCCAUACCUCGCCCGCAAAUc -3' miRNA: 3'- -CGUGCAGGGUAUGGAGCGGGCGUUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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