Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 5' | -55 | NC_003085.1 | + | 31337 | 0.74 | 0.249243 |
Target: 5'- -gACGUCCCAggccgGCCguccCGCCCGCGc-- -3' miRNA: 3'- cgUGCAGGGUa----UGGa---GCGGGCGUuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 45795 | 0.66 | 0.697967 |
Target: 5'- cGCGcCGUCCCugccuccaACCUCGCCaccaguGCAGc- -3' miRNA: 3'- -CGU-GCAGGGua------UGGAGCGGg-----CGUUua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 46612 | 0.66 | 0.675856 |
Target: 5'- gGCAUGgcucagCCCu--CCUCGCCCGg---- -3' miRNA: 3'- -CGUGCa-----GGGuauGGAGCGGGCguuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 25277 | 0.66 | 0.653573 |
Target: 5'- gGCGCG-CCCGUcuACCUCa-CCGCGAc- -3' miRNA: 3'- -CGUGCaGGGUA--UGGAGcgGGCGUUua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 43139 | 0.67 | 0.642396 |
Target: 5'- aGCGCG-CCCAUGCUgcgCGguuCCCGCu--- -3' miRNA: 3'- -CGUGCaGGGUAUGGa--GC---GGGCGuuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 24026 | 0.67 | 0.641278 |
Target: 5'- -aACGUCaccaagaacaacgCCAU-CCUCGCCCGCc--- -3' miRNA: 3'- cgUGCAG-------------GGUAuGGAGCGGGCGuuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 44985 | 0.67 | 0.631209 |
Target: 5'- cGCuuCGUCaCCGUGcCCUCGUcgUCGCGGAUg -3' miRNA: 3'- -CGu-GCAG-GGUAU-GGAGCG--GGCGUUUA- -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 3245 | 0.67 | 0.620023 |
Target: 5'- gGC-CGgCCCAcACaCUCGCCCGCc--- -3' miRNA: 3'- -CGuGCaGGGUaUG-GAGCGGGCGuuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 34605 | 0.68 | 0.586569 |
Target: 5'- aGCACGUCCUgcuucuccGU-CUUCGUCCGCu--- -3' miRNA: 3'- -CGUGCAGGG--------UAuGGAGCGGGCGuuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 40263 | 0.68 | 0.575485 |
Target: 5'- cUACGUCCCGccccccuacaACCUCGUCUGCGc-- -3' miRNA: 3'- cGUGCAGGGUa---------UGGAGCGGGCGUuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 40958 | 0.69 | 0.510267 |
Target: 5'- -gGCGUCCCugugGCCccgccagCGCUCGCAAGc -3' miRNA: 3'- cgUGCAGGGua--UGGa------GCGGGCGUUUa -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 40816 | 0.7 | 0.448337 |
Target: 5'- cGCGCGUCCCG-GCCg-GCCUGUAc-- -3' miRNA: 3'- -CGUGCAGGGUaUGGagCGGGCGUuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 40303 | 0.74 | 0.26262 |
Target: 5'- gGCAgCGUCgCCcucUACCUCGCCgGCAAGg -3' miRNA: 3'- -CGU-GCAG-GGu--AUGGAGCGGgCGUUUa -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 19917 | 0.74 | 0.25586 |
Target: 5'- aGCACGUCCU--GCCgcacgaCGCCCGCGc-- -3' miRNA: 3'- -CGUGCAGGGuaUGGa-----GCGGGCGUuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 26025 | 0.67 | 0.631209 |
Target: 5'- -uGCGUCCC-UGCUgCGCCUGCu--- -3' miRNA: 3'- cgUGCAGGGuAUGGaGCGGGCGuuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 21535 | 0.66 | 0.65804 |
Target: 5'- gGCAaGUCCCgGUACCggaaccacgcgcgGCCCGCGAGg -3' miRNA: 3'- -CGUgCAGGG-UAUGGag-----------CGGGCGUUUa -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 43717 | 0.66 | 0.663616 |
Target: 5'- uGCGCucaUCCGUaaucagugcgacgACCUCgGCCCGCGAGUa -3' miRNA: 3'- -CGUGca-GGGUA-------------UGGAG-CGGGCGUUUA- -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 35897 | 0.66 | 0.66473 |
Target: 5'- cCACGUCCaCGcgcGCCUUGCUCGCc--- -3' miRNA: 3'- cGUGCAGG-GUa--UGGAGCGGGCGuuua -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 40936 | 0.66 | 0.697967 |
Target: 5'- -gGCGUCaCCGccuucGCCUgCGCCCGCuGGUg -3' miRNA: 3'- cgUGCAG-GGUa----UGGA-GCGGGCGuUUA- -5' |
|||||||
11439 | 5' | -55 | NC_003085.1 | + | 33421 | 1.08 | 0.001097 |
Target: 5'- cGCACGUCCCAUACCUCGCCCGCAAAUc -3' miRNA: 3'- -CGUGCAGGGUAUGGAGCGGGCGUUUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home