Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 5' | -55 | NC_003085.1 | + | 6905 | 0.68 | 0.553468 |
Target: 5'- uCGCGUCagc--CCUCGCCCGCGc-- -3' miRNA: 3'- cGUGCAGgguauGGAGCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 9140 | 0.69 | 0.520945 |
Target: 5'- gGCACG-CgCCAgcCCUUGCCgGCGAGg -3' miRNA: 3'- -CGUGCaG-GGUauGGAGCGGgCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 30749 | 0.69 | 0.520945 |
Target: 5'- gGCGCGUCCCG--UCUCGUCagGCGGGg -3' miRNA: 3'- -CGUGCAGGGUauGGAGCGGg-CGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 36109 | 0.69 | 0.520945 |
Target: 5'- cCACcUCUCcUGCCUCGCCCGuCAGu- -3' miRNA: 3'- cGUGcAGGGuAUGGAGCGGGC-GUUua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40958 | 0.69 | 0.510267 |
Target: 5'- -gGCGUCCCugugGCCccgccagCGCUCGCAAGc -3' miRNA: 3'- cgUGCAGGGua--UGGa------GCGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 23680 | 0.69 | 0.510267 |
Target: 5'- aGCgGCGUCCCc-ACCUgcacgucggacuUGCCCGCGAGg -3' miRNA: 3'- -CG-UGCAGGGuaUGGA------------GCGGGCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 9738 | 0.69 | 0.510267 |
Target: 5'- cGCugGUCCuCAUccACCUUGCgCUGCGc-- -3' miRNA: 3'- -CGugCAGG-GUA--UGGAGCG-GGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 20301 | 0.7 | 0.468537 |
Target: 5'- uGCGgGUCCaaccgcgACgUCGCCUGCGAGUa -3' miRNA: 3'- -CGUgCAGGgua----UGgAGCGGGCGUUUA- -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40816 | 0.7 | 0.448337 |
Target: 5'- cGCGCGUCCCG-GCCg-GCCUGUAc-- -3' miRNA: 3'- -CGUGCAGGGUaUGGagCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 48974 | 0.73 | 0.291115 |
Target: 5'- cGCAgG-CCCucaGCCUCGCCCGUggGc -3' miRNA: 3'- -CGUgCaGGGua-UGGAGCGGGCGuuUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 40303 | 0.74 | 0.26262 |
Target: 5'- gGCAgCGUCgCCcucUACCUCGCCgGCAAGg -3' miRNA: 3'- -CGU-GCAG-GGu--AUGGAGCGGgCGUUUa -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 19917 | 0.74 | 0.25586 |
Target: 5'- aGCACGUCCU--GCCgcacgaCGCCCGCGc-- -3' miRNA: 3'- -CGUGCAGGGuaUGGa-----GCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 31337 | 0.74 | 0.249243 |
Target: 5'- -gACGUCCCAggccgGCCguccCGCCCGCGc-- -3' miRNA: 3'- cgUGCAGGGUa----UGGa---GCGGGCGUuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 17551 | 0.74 | 0.242768 |
Target: 5'- uGCuGC-UCCCGUGCCUCGUCCGCc--- -3' miRNA: 3'- -CG-UGcAGGGUAUGGAGCGGGCGuuua -5' |
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11439 | 5' | -55 | NC_003085.1 | + | 33421 | 1.08 | 0.001097 |
Target: 5'- cGCACGUCCCAUACCUCGCCCGCAAAUc -3' miRNA: 3'- -CGUGCAGGGUAUGGAGCGGGCGUUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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