miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11443 5' -55.2 NC_003085.1 + 32159 1.1 0.000742
Target:  5'- aCGACGUCUCACGCACAUCCAGCAGCGg -3'
miRNA:   3'- -GCUGCAGAGUGCGUGUAGGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 42245 0.78 0.141558
Target:  5'- gGACGgCUCGCGCuAC-UCCAGCGGCa -3'
miRNA:   3'- gCUGCaGAGUGCG-UGuAGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 29033 0.76 0.202044
Target:  5'- gGAUGcCUCcaACGC-CGUCCAGCAGCa -3'
miRNA:   3'- gCUGCaGAG--UGCGuGUAGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 43814 0.74 0.274534
Target:  5'- gCGGCG-CUCGCGCaagucacagggcgaGCGcUCCAGCAGCc -3'
miRNA:   3'- -GCUGCaGAGUGCG--------------UGU-AGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 27187 0.74 0.283762
Target:  5'- uCGGCGUCucUCACGCAUucgUCAcGCAGCGu -3'
miRNA:   3'- -GCUGCAG--AGUGCGUGua-GGU-CGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 26150 0.71 0.39865
Target:  5'- gCGGCGUCaa--GCAUcUCCAGCGGCa -3'
miRNA:   3'- -GCUGCAGagugCGUGuAGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 9094 0.71 0.426858
Target:  5'- aGGCGUCagCGC-CGCGggCAGCAGCGg -3'
miRNA:   3'- gCUGCAGa-GUGcGUGUagGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 28898 0.7 0.436521
Target:  5'- aGGCGUCUCAgcagaGCAuCAaCCAGCAGaCGc -3'
miRNA:   3'- gCUGCAGAGUg----CGU-GUaGGUCGUC-GC- -5'
11443 5' -55.2 NC_003085.1 + 22027 0.7 0.456216
Target:  5'- -aGCGUCUCugGCcuGCGUggCAGCAGCa -3'
miRNA:   3'- gcUGCAGAGugCG--UGUAg-GUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 13448 0.7 0.456216
Target:  5'- uGACGUgCUCugGUACGUCgCGgucaucGCGGCGc -3'
miRNA:   3'- gCUGCA-GAGugCGUGUAG-GU------CGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 41275 0.7 0.456216
Target:  5'- uGGCGggcCAUGCACAgcgcCCAGCGGCu -3'
miRNA:   3'- gCUGCagaGUGCGUGUa---GGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 33488 0.7 0.476381
Target:  5'- uGACG-CUCACGCcccACcucCCAGCGGCc -3'
miRNA:   3'- gCUGCaGAGUGCG---UGua-GGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 31825 0.7 0.476381
Target:  5'- cCGugG-CUCACGCcugcGCAggugcUCCGGCAcGCGa -3'
miRNA:   3'- -GCugCaGAGUGCG----UGU-----AGGUCGU-CGC- -5'
11443 5' -55.2 NC_003085.1 + 8641 0.69 0.486627
Target:  5'- -uACGUcCUCACcUACcgCCAGCAGCa -3'
miRNA:   3'- gcUGCA-GAGUGcGUGuaGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 2281 0.69 0.486627
Target:  5'- gGACuUCuUCGCGgGC-UCCGGCAGCa -3'
miRNA:   3'- gCUGcAG-AGUGCgUGuAGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 26565 0.69 0.486627
Target:  5'- aGACGcCgaacgCcgACGCACcggaGUCCGGCGGCGa -3'
miRNA:   3'- gCUGCaGa----G--UGCGUG----UAGGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 29534 0.69 0.496977
Target:  5'- -aGCGUCUuggCGCGgGCGUCguGCGGCa -3'
miRNA:   3'- gcUGCAGA---GUGCgUGUAGguCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 45244 0.69 0.496977
Target:  5'- uGACG-CUCAgcguaacccgcCGCGCGU-CAGCGGCGu -3'
miRNA:   3'- gCUGCaGAGU-----------GCGUGUAgGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 42814 0.69 0.496977
Target:  5'- uGAUGUCUUGCaCGgGUCCGGCgcuGGCGg -3'
miRNA:   3'- gCUGCAGAGUGcGUgUAGGUCG---UCGC- -5'
11443 5' -55.2 NC_003085.1 + 8398 0.69 0.496977
Target:  5'- cCGAC-UCUCGCGUcugaGCAUCCgcuGGCAGUu -3'
miRNA:   3'- -GCUGcAGAGUGCG----UGUAGG---UCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.