miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11443 5' -55.2 NC_003085.1 + 1869 0.66 0.671106
Target:  5'- gCGGCuccGUCUUGCGCuCAUCggcccaucaGGCAGCGg -3'
miRNA:   3'- -GCUG---CAGAGUGCGuGUAGg--------UCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 2281 0.69 0.486627
Target:  5'- gGACuUCuUCGCGgGC-UCCGGCAGCa -3'
miRNA:   3'- gCUGcAG-AGUGCgUGuAGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 2626 0.67 0.637973
Target:  5'- aGACG-CUgGCGuCGCAaCuCGGCGGCGa -3'
miRNA:   3'- gCUGCaGAgUGC-GUGUaG-GUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 2959 0.67 0.658981
Target:  5'- aCGGCGUCaagCGCGCGgugguuuCGUCgAGCGcGCGu -3'
miRNA:   3'- -GCUGCAGa--GUGCGU-------GUAGgUCGU-CGC- -5'
11443 5' -55.2 NC_003085.1 + 3516 0.67 0.626905
Target:  5'- uGGCGUCUCGCGaGCGUCauugAGgAGUGc -3'
miRNA:   3'- gCUGCAGAGUGCgUGUAGg---UCgUCGC- -5'
11443 5' -55.2 NC_003085.1 + 5738 0.67 0.664497
Target:  5'- cCGAgGUCgUCGCacugauuacggaugaGCGCAUCCcccuugAGCGGCGc -3'
miRNA:   3'- -GCUgCAG-AGUG---------------CGUGUAGG------UCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 7490 0.66 0.68209
Target:  5'- aGGCGUgUCACugggaagcgcagGUGCGUCuCGGUGGCGg -3'
miRNA:   3'- gCUGCAgAGUG------------CGUGUAG-GUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 7904 0.69 0.539297
Target:  5'- uGGCGUCggggCGaGCGCGUCCuGuCGGCGu -3'
miRNA:   3'- gCUGCAGa---GUgCGUGUAGGuC-GUCGC- -5'
11443 5' -55.2 NC_003085.1 + 8398 0.69 0.496977
Target:  5'- cCGAC-UCUCGCGUcugaGCAUCCgcuGGCAGUu -3'
miRNA:   3'- -GCUGcAGAGUGCG----UGUAGG---UCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 8641 0.69 0.486627
Target:  5'- -uACGUcCUCACcUACcgCCAGCAGCa -3'
miRNA:   3'- gcUGCA-GAGUGcGUGuaGGUCGUCGc -5'
11443 5' -55.2 NC_003085.1 + 8753 0.67 0.660085
Target:  5'- aGAgGUC-CACcgGCGCGUCCAGCAc-- -3'
miRNA:   3'- gCUgCAGaGUG--CGUGUAGGUCGUcgc -5'
11443 5' -55.2 NC_003085.1 + 8968 0.66 0.671106
Target:  5'- gCGGCuccggCUCgagACGC-CcgCCAGCAGCGa -3'
miRNA:   3'- -GCUGca---GAG---UGCGuGuaGGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 9094 0.71 0.426858
Target:  5'- aGGCGUCagCGC-CGCGggCAGCAGCGg -3'
miRNA:   3'- gCUGCAGa-GUGcGUGUagGUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 9871 0.67 0.637973
Target:  5'- gGACGUC-CACGgACGUCC-GUGGaCGa -3'
miRNA:   3'- gCUGCAGaGUGCgUGUAGGuCGUC-GC- -5'
11443 5' -55.2 NC_003085.1 + 9980 0.67 0.660085
Target:  5'- cCGAgCGcCUCgACGCGCAcgUCGGCAGgGg -3'
miRNA:   3'- -GCU-GCaGAG-UGCGUGUa-GGUCGUCgC- -5'
11443 5' -55.2 NC_003085.1 + 11342 0.66 0.703903
Target:  5'- gCGGCGagcCUCACgGCACcUCCgagacgaugguGGCGGCGc -3'
miRNA:   3'- -GCUGCa--GAGUG-CGUGuAGG-----------UCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 11602 0.67 0.660085
Target:  5'- cCGACGUCUgGCcggccaGCGCA---GGCAGCGc -3'
miRNA:   3'- -GCUGCAGAgUG------CGUGUaggUCGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 13448 0.7 0.456216
Target:  5'- uGACGUgCUCugGUACGUCgCGgucaucGCGGCGc -3'
miRNA:   3'- gCUGCA-GAGugCGUGUAG-GU------CGUCGC- -5'
11443 5' -55.2 NC_003085.1 + 18962 0.66 0.703903
Target:  5'- gCGACGg-UgGCGCGCuUCCugcGCAGCa -3'
miRNA:   3'- -GCUGCagAgUGCGUGuAGGu--CGUCGc -5'
11443 5' -55.2 NC_003085.1 + 19317 0.67 0.626905
Target:  5'- uGACGUCcUGCGUgggcuGCuggggCCGGCGGCGg -3'
miRNA:   3'- gCUGCAGaGUGCG-----UGua---GGUCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.