Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11443 | 5' | -55.2 | NC_003085.1 | + | 9871 | 0.67 | 0.637973 |
Target: 5'- gGACGUC-CACGgACGUCC-GUGGaCGa -3' miRNA: 3'- gCUGCAGaGUGCgUGUAGGuCGUC-GC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 42814 | 0.69 | 0.496977 |
Target: 5'- uGAUGUCUUGCaCGgGUCCGGCgcuGGCGg -3' miRNA: 3'- gCUGCAGAGUGcGUgUAGGUCG---UCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 48363 | 0.69 | 0.528591 |
Target: 5'- cCGAgUGaCUCACGCGCGcUCCugagcGCGGCGa -3' miRNA: 3'- -GCU-GCaGAGUGCGUGU-AGGu----CGUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 7904 | 0.69 | 0.539297 |
Target: 5'- uGGCGUCggggCGaGCGCGUCCuGuCGGCGu -3' miRNA: 3'- gCUGCAGa---GUgCGUGUAGGuC-GUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 40385 | 0.68 | 0.550075 |
Target: 5'- uGACGcCUCugGCGCuggCCGGCAu-- -3' miRNA: 3'- gCUGCaGAGugCGUGua-GGUCGUcgc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 20930 | 0.68 | 0.571821 |
Target: 5'- gGACGUCcuauggagcccCGCGCGCGUCUgcacgAGguGCGg -3' miRNA: 3'- gCUGCAGa----------GUGCGUGUAGG-----UCguCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 32240 | 0.67 | 0.615841 |
Target: 5'- gGGCG-C-CGCGUGCucaCCAGCGGCGc -3' miRNA: 3'- gCUGCaGaGUGCGUGua-GGUCGUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 23578 | 0.67 | 0.615841 |
Target: 5'- gCGAUGUCgcuggaggaCGCGUACaAUCgAGCGGUGa -3' miRNA: 3'- -GCUGCAGa--------GUGCGUG-UAGgUCGUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 3516 | 0.67 | 0.626905 |
Target: 5'- uGGCGUCUCGCGaGCGUCauugAGgAGUGc -3' miRNA: 3'- gCUGCAGAGUGCgUGUAGg---UCgUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 8398 | 0.69 | 0.496977 |
Target: 5'- cCGAC-UCUCGCGUcugaGCAUCCgcuGGCAGUu -3' miRNA: 3'- -GCUGcAGAGUGCG----UGUAGG---UCGUCGc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 23681 | 0.69 | 0.496977 |
Target: 5'- aGGCGUC-CACGCAgCGggcCCGcGCAGCa -3' miRNA: 3'- gCUGCAGaGUGCGU-GUa--GGU-CGUCGc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 26565 | 0.69 | 0.486627 |
Target: 5'- aGACGcCgaacgCcgACGCACcggaGUCCGGCGGCGa -3' miRNA: 3'- gCUGCaGa----G--UGCGUG----UAGGUCGUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 29033 | 0.76 | 0.202044 |
Target: 5'- gGAUGcCUCcaACGC-CGUCCAGCAGCa -3' miRNA: 3'- gCUGCaGAG--UGCGuGUAGGUCGUCGc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 27187 | 0.74 | 0.283762 |
Target: 5'- uCGGCGUCucUCACGCAUucgUCAcGCAGCGu -3' miRNA: 3'- -GCUGCAG--AGUGCGUGua-GGU-CGUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 28898 | 0.7 | 0.436521 |
Target: 5'- aGGCGUCUCAgcagaGCAuCAaCCAGCAGaCGc -3' miRNA: 3'- gCUGCAGAGUg----CGU-GUaGGUCGUC-GC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 41275 | 0.7 | 0.456216 |
Target: 5'- uGGCGggcCAUGCACAgcgcCCAGCGGCu -3' miRNA: 3'- gCUGCagaGUGCGUGUa---GGUCGUCGc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 13448 | 0.7 | 0.456216 |
Target: 5'- uGACGUgCUCugGUACGUCgCGgucaucGCGGCGc -3' miRNA: 3'- gCUGCA-GAGugCGUGUAG-GU------CGUCGC- -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 22027 | 0.7 | 0.456216 |
Target: 5'- -aGCGUCUCugGCcuGCGUggCAGCAGCa -3' miRNA: 3'- gcUGCAGAGugCG--UGUAg-GUCGUCGc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 2281 | 0.69 | 0.486627 |
Target: 5'- gGACuUCuUCGCGgGC-UCCGGCAGCa -3' miRNA: 3'- gCUGcAG-AGUGCgUGuAGGUCGUCGc -5' |
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11443 | 5' | -55.2 | NC_003085.1 | + | 8641 | 0.69 | 0.486627 |
Target: 5'- -uACGUcCUCACcUACcgCCAGCAGCa -3' miRNA: 3'- gcUGCA-GAGUGcGUGuaGGUCGUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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